miRNA display CGI


Results 1 - 20 of 481 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21402 5' -63.6 NC_004812.1 + 76672 0.76 0.164297
Target:  5'- cAGGGGcGuCUCGGGGGCCGCGGgaaacaggUCCCGc -3'
miRNA:   3'- -UCUCCuC-GAGCCCCUGGCGCU--------GGGGC- -5'
21402 5' -63.6 NC_004812.1 + 79024 0.78 0.11987
Target:  5'- uGGGGGucggcuggcugGGgUCGGGGGCCGCGGCCCa- -3'
miRNA:   3'- -UCUCC-----------UCgAGCCCCUGGCGCUGGGgc -5'
21402 5' -63.6 NC_004812.1 + 132954 0.78 0.120164
Target:  5'- cGGGGAcGCcgccccucgccuccgCGGGGACCGCGcGCCCCGg -3'
miRNA:   3'- uCUCCU-CGa--------------GCCCCUGGCGC-UGGGGC- -5'
21402 5' -63.6 NC_004812.1 + 12126 0.78 0.122847
Target:  5'- cGGGGGGgUUGGGGGCgCGCGGCgCCGg -3'
miRNA:   3'- uCUCCUCgAGCCCCUG-GCGCUGgGGC- -5'
21402 5' -63.6 NC_004812.1 + 36462 0.77 0.142196
Target:  5'- cGAGGAGCggGGGGGCCccGCG-CCCCa -3'
miRNA:   3'- uCUCCUCGagCCCCUGG--CGCuGGGGc -5'
21402 5' -63.6 NC_004812.1 + 83546 0.77 0.145681
Target:  5'- cGAGGAGCgcggucucCGGGaGGCCGUGcGCCCCGu -3'
miRNA:   3'- uCUCCUCGa-------GCCC-CUGGCGC-UGGGGC- -5'
21402 5' -63.6 NC_004812.1 + 99592 0.76 0.152884
Target:  5'- cGGcGGGGcCUCGGGGAuCCGCaGGCCCCc -3'
miRNA:   3'- -UCuCCUC-GAGCCCCU-GGCG-CUGGGGc -5'
21402 5' -63.6 NC_004812.1 + 109518 0.76 0.156606
Target:  5'- cGAcGGAGC-CGGGGGCCgagGCGcCCCCGg -3'
miRNA:   3'- uCU-CCUCGaGCCCCUGG---CGCuGGGGC- -5'
21402 5' -63.6 NC_004812.1 + 83855 0.76 0.16041
Target:  5'- gGGGGGAGCggcgGGGGGCgGCGcugccGCCCCGu -3'
miRNA:   3'- -UCUCCUCGag--CCCCUGgCGC-----UGGGGC- -5'
21402 5' -63.6 NC_004812.1 + 122572 0.78 0.11696
Target:  5'- gAGGGGAGCgCGGcGGCCGCGACaCCCu -3'
miRNA:   3'- -UCUCCUCGaGCCcCUGGCGCUG-GGGc -5'
21402 5' -63.6 NC_004812.1 + 78554 0.78 0.114115
Target:  5'- -aGGGGGCUcCGGGGGCUgGCGAUCCCGc -3'
miRNA:   3'- ucUCCUCGA-GCCCCUGG-CGCUGGGGC- -5'
21402 5' -63.6 NC_004812.1 + 124258 0.78 0.111336
Target:  5'- cGAGG-GCggucgugggggCGGGGACCGgGGCCCCGc -3'
miRNA:   3'- uCUCCuCGa----------GCCCCUGGCgCUGGGGC- -5'
21402 5' -63.6 NC_004812.1 + 5624 0.83 0.053727
Target:  5'- cGGAGGcGGCUCGGGGGCCG-GGCCCgGg -3'
miRNA:   3'- -UCUCC-UCGAGCCCCUGGCgCUGGGgC- -5'
21402 5' -63.6 NC_004812.1 + 32541 0.81 0.072648
Target:  5'- aAGAGGAGCacgCGGGcgcagcuGGCCGCGGCCCCc -3'
miRNA:   3'- -UCUCCUCGa--GCCC-------CUGGCGCUGGGGc -5'
21402 5' -63.6 NC_004812.1 + 68228 0.81 0.07469
Target:  5'- cGGGGGuGCgCGGGGGCCGgGGCCUCGg -3'
miRNA:   3'- -UCUCCuCGaGCCCCUGGCgCUGGGGC- -5'
21402 5' -63.6 NC_004812.1 + 15740 0.8 0.085539
Target:  5'- cGAGGGGCcgCGGGGGCCGCccgcgccgucagccgGGCCCUGg -3'
miRNA:   3'- uCUCCUCGa-GCCCCUGGCG---------------CUGGGGC- -5'
21402 5' -63.6 NC_004812.1 + 3328 0.79 0.09595
Target:  5'- gGGAGGGGCcCGaGGGGCCGCcgcGCCCCGc -3'
miRNA:   3'- -UCUCCUCGaGC-CCCUGGCGc--UGGGGC- -5'
21402 5' -63.6 NC_004812.1 + 33953 0.78 0.10862
Target:  5'- gGGGGGGGC-CGGGG-UCGCGGuCCCCGa -3'
miRNA:   3'- -UCUCCUCGaGCCCCuGGCGCU-GGGGC- -5'
21402 5' -63.6 NC_004812.1 + 103164 0.78 0.10862
Target:  5'- --uGGAGCgCGGGGGCCgccgucagcGCGGCCCCGg -3'
miRNA:   3'- ucuCCUCGaGCCCCUGG---------CGCUGGGGC- -5'
21402 5' -63.6 NC_004812.1 + 133926 0.78 0.111336
Target:  5'- gGGGGGAcgcgggguccGCUCGGGGcucCCGcCGGCCCCGg -3'
miRNA:   3'- -UCUCCU----------CGAGCCCCu--GGC-GCUGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.