miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21403 3' -49.1 NC_004812.1 + 110442 0.65 0.999028
Target:  5'- -cGCGUGGACGCucgaccuGCUGgccgagcgcCUGCGGcccAUGCa -3'
miRNA:   3'- gaUGCACUUGUG-------CGAU---------GACGUC---UACG- -5'
21403 3' -49.1 NC_004812.1 + 132863 0.66 0.998294
Target:  5'- gCUugGUGu-CGCGCaugugGCggaagaaGCGGGUGCg -3'
miRNA:   3'- -GAugCACuuGUGCGa----UGa------CGUCUACG- -5'
21403 3' -49.1 NC_004812.1 + 119409 0.66 0.998294
Target:  5'- --uCGUGGACggccccGCGCUgcugacGCUGCAGGUccucGCg -3'
miRNA:   3'- gauGCACUUG------UGCGA------UGACGUCUA----CG- -5'
21403 3' -49.1 NC_004812.1 + 83091 0.66 0.998837
Target:  5'- -cGCGUcaucCACGC-GCUGgAGGUGCg -3'
miRNA:   3'- gaUGCAcuu-GUGCGaUGACgUCUACG- -5'
21403 3' -49.1 NC_004812.1 + 82884 0.66 0.998837
Target:  5'- -gGCGgccGACACGCgcaccucCUcGCGGGUGCg -3'
miRNA:   3'- gaUGCac-UUGUGCGau-----GA-CGUCUACG- -5'
21403 3' -49.1 NC_004812.1 + 78689 0.66 0.99795
Target:  5'- -----cGAAC-CGCUGCUGCAGc-GCa -3'
miRNA:   3'- gaugcaCUUGuGCGAUGACGUCuaCG- -5'
21403 3' -49.1 NC_004812.1 + 2724 0.66 0.998837
Target:  5'- cCUGCcUGAAgACGUgGCUGCccAUGCg -3'
miRNA:   3'- -GAUGcACUUgUGCGaUGACGucUACG- -5'
21403 3' -49.1 NC_004812.1 + 144510 0.66 0.99795
Target:  5'- cCUGCGcGAgGCGCGCguggGCgacaGCGGaAUGCa -3'
miRNA:   3'- -GAUGCaCU-UGUGCGa---UGa---CGUC-UACG- -5'
21403 3' -49.1 NC_004812.1 + 53407 0.66 0.998294
Target:  5'- -cACGUacagcuccacGAGCGCGUUGCUGaGGAgggGCu -3'
miRNA:   3'- gaUGCA----------CUUGUGCGAUGACgUCUa--CG- -5'
21403 3' -49.1 NC_004812.1 + 109649 0.66 0.99795
Target:  5'- --cCGUc--CGCGCUGCUGCGGAUc- -3'
miRNA:   3'- gauGCAcuuGUGCGAUGACGUCUAcg -5'
21403 3' -49.1 NC_004812.1 + 111002 0.66 0.998294
Target:  5'- -cGCGcccaUGAGgGCGCUGgaGCGGGaGCa -3'
miRNA:   3'- gaUGC----ACUUgUGCGAUgaCGUCUaCG- -5'
21403 3' -49.1 NC_004812.1 + 44456 0.66 0.998837
Target:  5'- -gGCG-GAGCAUGCcGCgggcGCGGGUGg -3'
miRNA:   3'- gaUGCaCUUGUGCGaUGa---CGUCUACg -5'
21403 3' -49.1 NC_004812.1 + 147731 0.66 0.998294
Target:  5'- gUACGUGAugACGCgggguCcGCGGGacGCg -3'
miRNA:   3'- gAUGCACUugUGCGau---GaCGUCUa-CG- -5'
21403 3' -49.1 NC_004812.1 + 70117 0.66 0.998837
Target:  5'- -gGCGccGGGCGCGUgGCUGCGGcccGCg -3'
miRNA:   3'- gaUGCa-CUUGUGCGaUGACGUCua-CG- -5'
21403 3' -49.1 NC_004812.1 + 70073 0.66 0.99795
Target:  5'- -cACGcGAaccACACGCUggaGCUGCAgccGAUGUu -3'
miRNA:   3'- gaUGCaCU---UGUGCGA---UGACGU---CUACG- -5'
21403 3' -49.1 NC_004812.1 + 100482 0.66 0.998587
Target:  5'- -cGCGgccgcccgGAGCGCGCaggcgUACcGCAGcgGCg -3'
miRNA:   3'- gaUGCa-------CUUGUGCG-----AUGaCGUCuaCG- -5'
21403 3' -49.1 NC_004812.1 + 85116 0.66 0.998417
Target:  5'- -cACGUGAccgccaacuaccgggGCGCGCgg--GCGGggGCg -3'
miRNA:   3'- gaUGCACU---------------UGUGCGaugaCGUCuaCG- -5'
21403 3' -49.1 NC_004812.1 + 15965 0.66 0.998094
Target:  5'- -cGCGUGGcgccgccgcgcggcgGCGCGuCUACaGCAccGGUGCa -3'
miRNA:   3'- gaUGCACU---------------UGUGC-GAUGaCGU--CUACG- -5'
21403 3' -49.1 NC_004812.1 + 5814 0.66 0.998587
Target:  5'- gCUGCG-GGGCGCgGCgggcuCUGCGGGccgGCg -3'
miRNA:   3'- -GAUGCaCUUGUG-CGau---GACGUCUa--CG- -5'
21403 3' -49.1 NC_004812.1 + 60857 0.66 0.998587
Target:  5'- -cGCGUcagguucgGGGCGCGCgGCUGggcucCAGGUGCc -3'
miRNA:   3'- gaUGCA--------CUUGUGCGaUGAC-----GUCUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.