miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21403 3' -49.1 NC_004812.1 + 477 0.7 0.97934
Target:  5'- cCUGCGUGcGCACGCgcCUGC---UGCc -3'
miRNA:   3'- -GAUGCACuUGUGCGauGACGucuACG- -5'
21403 3' -49.1 NC_004812.1 + 2724 0.66 0.998837
Target:  5'- cCUGCcUGAAgACGUgGCUGCccAUGCg -3'
miRNA:   3'- -GAUGcACUUgUGCGaUGACGucUACG- -5'
21403 3' -49.1 NC_004812.1 + 4297 0.67 0.995944
Target:  5'- -cGCGUacGCGCGCcgcagGCUGguGAUGa -3'
miRNA:   3'- gaUGCAcuUGUGCGa----UGACguCUACg -5'
21403 3' -49.1 NC_004812.1 + 4522 0.68 0.994457
Target:  5'- -gACcaGGGCGCGCUGCUggGCGGccGCa -3'
miRNA:   3'- gaUGcaCUUGUGCGAUGA--CGUCuaCG- -5'
21403 3' -49.1 NC_004812.1 + 5814 0.66 0.998587
Target:  5'- gCUGCG-GGGCGCgGCgggcuCUGCGGGccgGCg -3'
miRNA:   3'- -GAUGCaCUUGUG-CGau---GACGUCUa--CG- -5'
21403 3' -49.1 NC_004812.1 + 8637 0.68 0.994457
Target:  5'- -gGCGccaUGAGCACGgaGCgccGCGGggGCg -3'
miRNA:   3'- gaUGC---ACUUGUGCgaUGa--CGUCuaCG- -5'
21403 3' -49.1 NC_004812.1 + 10546 0.69 0.981584
Target:  5'- -gGCGUGAaucACGCGCguuCUGCGugccggcgagcGGUGCc -3'
miRNA:   3'- gaUGCACU---UGUGCGau-GACGU-----------CUACG- -5'
21403 3' -49.1 NC_004812.1 + 15187 0.68 0.992557
Target:  5'- -gGCGcccagagGAGgACGCUGCgGCAGgcGCg -3'
miRNA:   3'- gaUGCa------CUUgUGCGAUGaCGUCuaCG- -5'
21403 3' -49.1 NC_004812.1 + 15530 0.7 0.97934
Target:  5'- gUGCGUGAccccgccgGCGCGCaGC-GCGGAgagUGCg -3'
miRNA:   3'- gAUGCACU--------UGUGCGaUGaCGUCU---ACG- -5'
21403 3' -49.1 NC_004812.1 + 15965 0.66 0.998094
Target:  5'- -cGCGUGGcgccgccgcgcggcgGCGCGuCUACaGCAccGGUGCa -3'
miRNA:   3'- gaUGCACU---------------UGUGC-GAUGaCGU--CUACG- -5'
21403 3' -49.1 NC_004812.1 + 16886 0.69 0.986219
Target:  5'- -gGCGUGGccgaggccaucagccACcagGCGCUGCUGCgcauggccugcgAGGUGCg -3'
miRNA:   3'- gaUGCACU---------------UG---UGCGAUGACG------------UCUACG- -5'
21403 3' -49.1 NC_004812.1 + 17455 0.68 0.99131
Target:  5'- -gGCGgugggGGugGCGCUcucgaccGCgGCGGAUGCc -3'
miRNA:   3'- gaUGCa----CUugUGCGA-------UGaCGUCUACG- -5'
21403 3' -49.1 NC_004812.1 + 20097 0.67 0.99755
Target:  5'- cCU-CGgagGAGCGCGCcGCgcGCAGcgGCg -3'
miRNA:   3'- -GAuGCa--CUUGUGCGaUGa-CGUCuaCG- -5'
21403 3' -49.1 NC_004812.1 + 20398 0.68 0.991429
Target:  5'- -gGCGUaGAGCugGCg---GUGGGUGCg -3'
miRNA:   3'- gaUGCA-CUUGugCGaugaCGUCUACG- -5'
21403 3' -49.1 NC_004812.1 + 20602 0.68 0.991429
Target:  5'- -gGCGaGGACGCGCgcCUGCGacUGCg -3'
miRNA:   3'- gaUGCaCUUGUGCGauGACGUcuACG- -5'
21403 3' -49.1 NC_004812.1 + 21147 0.67 0.99755
Target:  5'- gUugGUGucgccGGCGCGCaGCUcGCGGAggagGCg -3'
miRNA:   3'- gAugCAC-----UUGUGCGaUGA-CGUCUa---CG- -5'
21403 3' -49.1 NC_004812.1 + 22900 0.67 0.995248
Target:  5'- --uCGUGucugGCGCGUgcCUGCGGggGCg -3'
miRNA:   3'- gauGCACu---UGUGCGauGACGUCuaCG- -5'
21403 3' -49.1 NC_004812.1 + 23115 0.7 0.97934
Target:  5'- cCUGCGU---CugGUUGCUGCAGAucaccguccUGCu -3'
miRNA:   3'- -GAUGCAcuuGugCGAUGACGUCU---------ACG- -5'
21403 3' -49.1 NC_004812.1 + 24851 0.67 0.996555
Target:  5'- -cGCGccgcGGGCgGCGCgGCUGCGGggGCg -3'
miRNA:   3'- gaUGCa---CUUG-UGCGaUGACGUCuaCG- -5'
21403 3' -49.1 NC_004812.1 + 30174 0.67 0.996555
Target:  5'- cCUAgGUGccGCGCGCgGCUGCcugGGggGCa -3'
miRNA:   3'- -GAUgCACu-UGUGCGaUGACG---UCuaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.