miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21403 3' -49.1 NC_004812.1 + 108186 0.69 0.985517
Target:  5'- -aGCGaGAagGCGCGCUACgaGCGGAgccugGCg -3'
miRNA:   3'- gaUGCaCU--UGUGCGAUGa-CGUCUa----CG- -5'
21403 3' -49.1 NC_004812.1 + 23115 0.7 0.97934
Target:  5'- cCUGCGU---CugGUUGCUGCAGAucaccguccUGCu -3'
miRNA:   3'- -GAUGCAcuuGugCGAUGACGUCU---------ACG- -5'
21403 3' -49.1 NC_004812.1 + 145940 0.7 0.97934
Target:  5'- -gACGUGGuugGCGCUGC-GCuGGGUGCg -3'
miRNA:   3'- gaUGCACUug-UGCGAUGaCG-UCUACG- -5'
21403 3' -49.1 NC_004812.1 + 477 0.7 0.97934
Target:  5'- cCUGCGUGcGCACGCgcCUGC---UGCc -3'
miRNA:   3'- -GAUGCACuUGUGCGauGACGucuACG- -5'
21403 3' -49.1 NC_004812.1 + 15530 0.7 0.97934
Target:  5'- gUGCGUGAccccgccgGCGCGCaGC-GCGGAgagUGCg -3'
miRNA:   3'- gAUGCACU--------UGUGCGaUGaCGUCU---ACG- -5'
21403 3' -49.1 NC_004812.1 + 137170 0.69 0.982428
Target:  5'- gUACGcGAGCuccgugcacgaggcgAgGCUGCUGCGGcgGCu -3'
miRNA:   3'- gAUGCaCUUG---------------UgCGAUGACGUCuaCG- -5'
21403 3' -49.1 NC_004812.1 + 77918 0.69 0.985517
Target:  5'- -gGCcUGGAUGCGCUGCaGCAGcgGUu -3'
miRNA:   3'- gaUGcACUUGUGCGAUGaCGUCuaCG- -5'
21403 3' -49.1 NC_004812.1 + 113220 0.69 0.985517
Target:  5'- gCUGCGguccaucucgGAGCGCGCgGCcGCGGA-GCg -3'
miRNA:   3'- -GAUGCa---------CUUGUGCGaUGaCGUCUaCG- -5'
21403 3' -49.1 NC_004812.1 + 50058 0.69 0.985517
Target:  5'- -aACGUGGACcaccGCGCccGCUGCgAGGUGg -3'
miRNA:   3'- gaUGCACUUG----UGCGa-UGACG-UCUACg -5'
21403 3' -49.1 NC_004812.1 + 59400 0.7 0.9769
Target:  5'- -gACGUGGGCAcCGCcggguccacgUACUGCAGGUu- -3'
miRNA:   3'- gaUGCACUUGU-GCG----------AUGACGUCUAcg -5'
21403 3' -49.1 NC_004812.1 + 108728 0.7 0.967993
Target:  5'- gCU-CGUG-GCGCGCUacuaccuGCUGCAGGcgcUGCg -3'
miRNA:   3'- -GAuGCACuUGUGCGA-------UGACGUCU---ACG- -5'
21403 3' -49.1 NC_004812.1 + 64454 0.71 0.965005
Target:  5'- gCUGCG-GGACugGCUcGCcaUGCGGAaGCa -3'
miRNA:   3'- -GAUGCaCUUGugCGA-UG--ACGUCUaCG- -5'
21403 3' -49.1 NC_004812.1 + 88879 0.73 0.892209
Target:  5'- gCUGCGccccAACACGCUgcuGCUGCAGGaGCu -3'
miRNA:   3'- -GAUGCac--UUGUGCGA---UGACGUCUaCG- -5'
21403 3' -49.1 NC_004812.1 + 109668 0.72 0.924054
Target:  5'- -cGCG-GGACGCGCgGCUGuCGGcgGCg -3'
miRNA:   3'- gaUGCaCUUGUGCGaUGAC-GUCuaCG- -5'
21403 3' -49.1 NC_004812.1 + 84743 0.72 0.924054
Target:  5'- --cCGUGcGCGCGCUcCUGCAGGggaucgUGCg -3'
miRNA:   3'- gauGCACuUGUGCGAuGACGUCU------ACG- -5'
21403 3' -49.1 NC_004812.1 + 138556 0.72 0.94002
Target:  5'- cCU-CGUGAACGC-CUcGCUGCuGGUGCc -3'
miRNA:   3'- -GAuGCACUUGUGcGA-UGACGuCUACG- -5'
21403 3' -49.1 NC_004812.1 + 56404 0.72 0.944818
Target:  5'- cCUGCuG-GGugACGUgAUUGCAGAUGCg -3'
miRNA:   3'- -GAUG-CaCUugUGCGaUGACGUCUACG- -5'
21403 3' -49.1 NC_004812.1 + 37927 0.71 0.949357
Target:  5'- aCUGCGUGAcgagGCGCGCcaggGC-GCAGAacacgUGCu -3'
miRNA:   3'- -GAUGCACU----UGUGCGa---UGaCGUCU-----ACG- -5'
21403 3' -49.1 NC_004812.1 + 112161 0.71 0.953641
Target:  5'- -gGCG-GGGC-CGCguaUGCAGAUGCg -3'
miRNA:   3'- gaUGCaCUUGuGCGaugACGUCUACG- -5'
21403 3' -49.1 NC_004812.1 + 97393 0.71 0.96035
Target:  5'- -gGCGUGGGCGCGCgggccucgggcgcgUACUGguGGgucgacgGCg -3'
miRNA:   3'- gaUGCACUUGUGCG--------------AUGACguCUa------CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.