Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21404 | 3' | -53.1 | NC_004812.1 | + | 79339 | 0.66 | 0.96854 |
Target: 5'- gGUGCGgcggaGCUCGggccUGGcCGAGCUcgagcGCUUCGa -3' miRNA: 3'- -CAUGCg----CGAGU----ACC-GCUCGA-----UGAAGU- -5' |
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21404 | 3' | -53.1 | NC_004812.1 | + | 147982 | 0.66 | 0.971548 |
Target: 5'- --cCGUGCUCAUGGCGccgGGCgGCg--- -3' miRNA: 3'- cauGCGCGAGUACCGC---UCGaUGaagu -5' |
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21404 | 3' | -53.1 | NC_004812.1 | + | 129861 | 0.66 | 0.971548 |
Target: 5'- -gGCG-GCUCAUGGCGAcgGCgGCggCGg -3' miRNA: 3'- caUGCgCGAGUACCGCU--CGaUGaaGU- -5' |
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21404 | 3' | -53.1 | NC_004812.1 | + | 36004 | 0.66 | 0.961858 |
Target: 5'- -gAgGCGCUCcaggcugcgGUGGCGGGCgGCgaugUCGg -3' miRNA: 3'- caUgCGCGAG---------UACCGCUCGaUGa---AGU- -5' |
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21404 | 3' | -53.1 | NC_004812.1 | + | 15216 | 0.66 | 0.961858 |
Target: 5'- uUGCGCGCggCcUGGCcGA-CUGCUUCGc -3' miRNA: 3'- cAUGCGCGa-GuACCG-CUcGAUGAAGU- -5' |
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21404 | 3' | -53.1 | NC_004812.1 | + | 49131 | 0.66 | 0.958172 |
Target: 5'- --cCGCGCUCGUGGUccuccagcGGCUGC-UCGc -3' miRNA: 3'- cauGCGCGAGUACCGc-------UCGAUGaAGU- -5' |
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21404 | 3' | -53.1 | NC_004812.1 | + | 101019 | 0.66 | 0.965312 |
Target: 5'- ---aGCGCUCGcUGGCGAGCcugggGCg--- -3' miRNA: 3'- caugCGCGAGU-ACCGCUCGa----UGaagu -5' |
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21404 | 3' | -53.1 | NC_004812.1 | + | 4353 | 0.66 | 0.971549 |
Target: 5'- -gGCG-GCUCAUGGCGAcgGCgGCggCGg -3' miRNA: 3'- caUGCgCGAGUACCGCU--CGaUGaaGU- -5' |
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21404 | 3' | -53.1 | NC_004812.1 | + | 20166 | 0.66 | 0.970964 |
Target: 5'- -gGCgGCGCUCGggccccgacccgGGCGAGCgggcgcguCUUCGa -3' miRNA: 3'- caUG-CGCGAGUa-----------CCGCUCGau------GAAGU- -5' |
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21404 | 3' | -53.1 | NC_004812.1 | + | 67309 | 0.67 | 0.94102 |
Target: 5'- -aGCGgGCUCGgggaGGCGAGCgcggGCgcUCAc -3' miRNA: 3'- caUGCgCGAGUa---CCGCUCGa---UGa-AGU- -5' |
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21404 | 3' | -53.1 | NC_004812.1 | + | 26211 | 0.67 | 0.951781 |
Target: 5'- -cGCGCGCgccgcCGUGGCcgggcgcgacgccacGGGCcGCUUCAc -3' miRNA: 3'- caUGCGCGa----GUACCG---------------CUCGaUGAAGU- -5' |
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21404 | 3' | -53.1 | NC_004812.1 | + | 64705 | 0.67 | 0.950086 |
Target: 5'- -gGCGgGCccUCAgggcccccGCGGGCUGCUUCAc -3' miRNA: 3'- caUGCgCG--AGUac------CGCUCGAUGAAGU- -5' |
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21404 | 3' | -53.1 | NC_004812.1 | + | 151719 | 0.67 | 0.951781 |
Target: 5'- -cGCGCGCgccgcCGUGGCcgggcgcgacgccacGGGCcGCUUCAc -3' miRNA: 3'- caUGCGCGa----GUACCG---------------CUCGaUGAAGU- -5' |
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21404 | 3' | -53.1 | NC_004812.1 | + | 111748 | 0.67 | 0.945677 |
Target: 5'- --cCGCGCUCGUGcGCGcgcGCUACg--- -3' miRNA: 3'- cauGCGCGAGUAC-CGCu--CGAUGaagu -5' |
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21404 | 3' | -53.1 | NC_004812.1 | + | 87032 | 0.68 | 0.913951 |
Target: 5'- cGU-CGCGCUCGgaGGCG-GCUGCggCGc -3' miRNA: 3'- -CAuGCGCGAGUa-CCGCuCGAUGaaGU- -5' |
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21404 | 3' | -53.1 | NC_004812.1 | + | 136789 | 0.68 | 0.901359 |
Target: 5'- cGUGCGCGCUgGUGGCccugGAGC-GCg--- -3' miRNA: 3'- -CAUGCGCGAgUACCG----CUCGaUGaagu -5' |
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21404 | 3' | -53.1 | NC_004812.1 | + | 37682 | 0.68 | 0.901359 |
Target: 5'- aUGCGCGCg---GGCGAGCcgUGCcUCGg -3' miRNA: 3'- cAUGCGCGaguaCCGCUCG--AUGaAGU- -5' |
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21404 | 3' | -53.1 | NC_004812.1 | + | 86369 | 0.68 | 0.903957 |
Target: 5'- gGUGCGCGCUgGgugggcggaagagggUGGCG-GCUGCgggUCc -3' miRNA: 3'- -CAUGCGCGAgU---------------ACCGCuCGAUGa--AGu -5' |
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21404 | 3' | -53.1 | NC_004812.1 | + | 6781 | 0.68 | 0.901359 |
Target: 5'- aUGCGCGCg---GGCGAGCcgUGCcUCGg -3' miRNA: 3'- cAUGCGCGaguaCCGCUCG--AUGaAGU- -5' |
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21404 | 3' | -53.1 | NC_004812.1 | + | 59228 | 0.69 | 0.877705 |
Target: 5'- -cGCGCGCcCAcgcccgcgaccgcGGCGAGCUGCUUg- -3' miRNA: 3'- caUGCGCGaGUa------------CCGCUCGAUGAAgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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