miRNA display CGI


Results 1 - 20 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21404 3' -53.1 NC_004812.1 + 4353 0.66 0.971549
Target:  5'- -gGCG-GCUCAUGGCGAcgGCgGCggCGg -3'
miRNA:   3'- caUGCgCGAGUACCGCU--CGaUGaaGU- -5'
21404 3' -53.1 NC_004812.1 + 6781 0.68 0.901359
Target:  5'- aUGCGCGCg---GGCGAGCcgUGCcUCGg -3'
miRNA:   3'- cAUGCGCGaguaCCGCUCG--AUGaAGU- -5'
21404 3' -53.1 NC_004812.1 + 12372 0.69 0.88778
Target:  5'- -aGCGCGUgaucgUCAUGGCGAGCa------ -3'
miRNA:   3'- caUGCGCG-----AGUACCGCUCGaugaagu -5'
21404 3' -53.1 NC_004812.1 + 15216 0.66 0.961858
Target:  5'- uUGCGCGCggCcUGGCcGA-CUGCUUCGc -3'
miRNA:   3'- cAUGCGCGa-GuACCG-CUcGAUGAAGU- -5'
21404 3' -53.1 NC_004812.1 + 20166 0.66 0.970964
Target:  5'- -gGCgGCGCUCGggccccgacccgGGCGAGCgggcgcguCUUCGa -3'
miRNA:   3'- caUG-CGCGAGUa-----------CCGCUCGau------GAAGU- -5'
21404 3' -53.1 NC_004812.1 + 26211 0.67 0.951781
Target:  5'- -cGCGCGCgccgcCGUGGCcgggcgcgacgccacGGGCcGCUUCAc -3'
miRNA:   3'- caUGCGCGa----GUACCG---------------CUCGaUGAAGU- -5'
21404 3' -53.1 NC_004812.1 + 36004 0.66 0.961858
Target:  5'- -gAgGCGCUCcaggcugcgGUGGCGGGCgGCgaugUCGg -3'
miRNA:   3'- caUgCGCGAG---------UACCGCUCGaUGa---AGU- -5'
21404 3' -53.1 NC_004812.1 + 37682 0.68 0.901359
Target:  5'- aUGCGCGCg---GGCGAGCcgUGCcUCGg -3'
miRNA:   3'- cAUGCGCGaguaCCGCUCG--AUGaAGU- -5'
21404 3' -53.1 NC_004812.1 + 49131 0.66 0.958172
Target:  5'- --cCGCGCUCGUGGUccuccagcGGCUGC-UCGc -3'
miRNA:   3'- cauGCGCGAGUACCGc-------UCGAUGaAGU- -5'
21404 3' -53.1 NC_004812.1 + 56131 0.7 0.841483
Target:  5'- cUGCGCGCUCcgGGCG-GCcGCg--- -3'
miRNA:   3'- cAUGCGCGAGuaCCGCuCGaUGaagu -5'
21404 3' -53.1 NC_004812.1 + 59228 0.69 0.877705
Target:  5'- -cGCGCGCcCAcgcccgcgaccgcGGCGAGCUGCUUg- -3'
miRNA:   3'- caUGCGCGaGUa------------CCGCUCGAUGAAgu -5'
21404 3' -53.1 NC_004812.1 + 64705 0.67 0.950086
Target:  5'- -gGCGgGCccUCAgggcccccGCGGGCUGCUUCAc -3'
miRNA:   3'- caUGCgCG--AGUac------CGCUCGAUGAAGU- -5'
21404 3' -53.1 NC_004812.1 + 67309 0.67 0.94102
Target:  5'- -aGCGgGCUCGgggaGGCGAGCgcggGCgcUCAc -3'
miRNA:   3'- caUGCgCGAGUa---CCGCUCGa---UGa-AGU- -5'
21404 3' -53.1 NC_004812.1 + 68523 0.69 0.890574
Target:  5'- uGU-CGCGCUCGcuggaaagucuagaGGCGAGCUACgUCu -3'
miRNA:   3'- -CAuGCGCGAGUa-------------CCGCUCGAUGaAGu -5'
21404 3' -53.1 NC_004812.1 + 77461 0.7 0.857797
Target:  5'- -gGgGgGCUCGUGGCGAGCggagGCg--- -3'
miRNA:   3'- caUgCgCGAGUACCGCUCGa---UGaagu -5'
21404 3' -53.1 NC_004812.1 + 79339 0.66 0.96854
Target:  5'- gGUGCGgcggaGCUCGggccUGGcCGAGCUcgagcGCUUCGa -3'
miRNA:   3'- -CAUGCg----CGAGU----ACC-GCUCGA-----UGAAGU- -5'
21404 3' -53.1 NC_004812.1 + 85357 0.73 0.69837
Target:  5'- cGUGCGCGUUCAucgaccUGGacgcCGAGCUguGCUUCGg -3'
miRNA:   3'- -CAUGCGCGAGU------ACC----GCUCGA--UGAAGU- -5'
21404 3' -53.1 NC_004812.1 + 86369 0.68 0.903957
Target:  5'- gGUGCGCGCUgGgugggcggaagagggUGGCG-GCUGCgggUCc -3'
miRNA:   3'- -CAUGCGCGAgU---------------ACCGCuCGAUGa--AGu -5'
21404 3' -53.1 NC_004812.1 + 87032 0.68 0.913951
Target:  5'- cGU-CGCGCUCGgaGGCG-GCUGCggCGc -3'
miRNA:   3'- -CAuGCGCGAGUa-CCGCuCGAUGaaGU- -5'
21404 3' -53.1 NC_004812.1 + 87346 0.69 0.873246
Target:  5'- aUGCG-GCUCAUGgagcGCGGGCUGCagUCGg -3'
miRNA:   3'- cAUGCgCGAGUAC----CGCUCGAUGa-AGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.