Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21404 | 3' | -53.1 | NC_004812.1 | + | 108724 | 0.76 | 0.52121 |
Target: 5'- --uCGUGCUCGUGGCGcGCUACUa-- -3' miRNA: 3'- cauGCGCGAGUACCGCuCGAUGAagu -5' |
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21404 | 3' | -53.1 | NC_004812.1 | + | 147982 | 0.66 | 0.971548 |
Target: 5'- --cCGUGCUCAUGGCGccgGGCgGCg--- -3' miRNA: 3'- cauGCGCGAGUACCGC---UCGaUGaagu -5' |
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21404 | 3' | -53.1 | NC_004812.1 | + | 129861 | 0.66 | 0.971548 |
Target: 5'- -gGCG-GCUCAUGGCGAcgGCgGCggCGg -3' miRNA: 3'- caUGCgCGAGUACCGCU--CGaUGaaGU- -5' |
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21404 | 3' | -53.1 | NC_004812.1 | + | 36004 | 0.66 | 0.961858 |
Target: 5'- -gAgGCGCUCcaggcugcgGUGGCGGGCgGCgaugUCGg -3' miRNA: 3'- caUgCGCGAG---------UACCGCUCGaUGa---AGU- -5' |
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21404 | 3' | -53.1 | NC_004812.1 | + | 15216 | 0.66 | 0.961858 |
Target: 5'- uUGCGCGCggCcUGGCcGA-CUGCUUCGc -3' miRNA: 3'- cAUGCGCGa-GuACCG-CUcGAUGAAGU- -5' |
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21404 | 3' | -53.1 | NC_004812.1 | + | 49131 | 0.66 | 0.958172 |
Target: 5'- --cCGCGCUCGUGGUccuccagcGGCUGC-UCGc -3' miRNA: 3'- cauGCGCGAGUACCGc-------UCGAUGaAGU- -5' |
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21404 | 3' | -53.1 | NC_004812.1 | + | 151719 | 0.67 | 0.951781 |
Target: 5'- -cGCGCGCgccgcCGUGGCcgggcgcgacgccacGGGCcGCUUCAc -3' miRNA: 3'- caUGCGCGa----GUACCG---------------CUCGaUGAAGU- -5' |
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21404 | 3' | -53.1 | NC_004812.1 | + | 6781 | 0.68 | 0.901359 |
Target: 5'- aUGCGCGCg---GGCGAGCcgUGCcUCGg -3' miRNA: 3'- cAUGCGCGaguaCCGCUCG--AUGaAGU- -5' |
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21404 | 3' | -53.1 | NC_004812.1 | + | 68523 | 0.69 | 0.890574 |
Target: 5'- uGU-CGCGCUCGcuggaaagucuagaGGCGAGCUACgUCu -3' miRNA: 3'- -CAuGCGCGAGUa-------------CCGCUCGAUGaAGu -5' |
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21404 | 3' | -53.1 | NC_004812.1 | + | 12372 | 0.69 | 0.88778 |
Target: 5'- -aGCGCGUgaucgUCAUGGCGAGCa------ -3' miRNA: 3'- caUGCGCG-----AGUACCGCUCGaugaagu -5' |
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21404 | 3' | -53.1 | NC_004812.1 | + | 145410 | 0.69 | 0.873246 |
Target: 5'- -cGCGCGCgggCGUGGCGGGCc------ -3' miRNA: 3'- caUGCGCGa--GUACCGCUCGaugaagu -5' |
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21404 | 3' | -53.1 | NC_004812.1 | + | 87346 | 0.69 | 0.873246 |
Target: 5'- aUGCG-GCUCAUGgagcGCGGGCUGCagUCGg -3' miRNA: 3'- cAUGCgCGAGUAC----CGCUCGAUGa-AGU- -5' |
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21404 | 3' | -53.1 | NC_004812.1 | + | 77461 | 0.7 | 0.857797 |
Target: 5'- -gGgGgGCUCGUGGCGAGCggagGCg--- -3' miRNA: 3'- caUgCgCGAGUACCGCUCGa---UGaagu -5' |
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21404 | 3' | -53.1 | NC_004812.1 | + | 85357 | 0.73 | 0.69837 |
Target: 5'- cGUGCGCGUUCAucgaccUGGacgcCGAGCUguGCUUCGg -3' miRNA: 3'- -CAUGCGCGAGU------ACC----GCUCGA--UGAAGU- -5' |
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21404 | 3' | -53.1 | NC_004812.1 | + | 110275 | 0.72 | 0.739216 |
Target: 5'- -gGCG-GCUCGUGGCGGGCggACUggCGg -3' miRNA: 3'- caUGCgCGAGUACCGCUCGa-UGAa-GU- -5' |
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21404 | 3' | -53.1 | NC_004812.1 | + | 131296 | 0.73 | 0.708695 |
Target: 5'- -gACGCGCUCGccGGUGAGCUuccgggcCUUCGu -3' miRNA: 3'- caUGCGCGAGUa-CCGCUCGAu------GAAGU- -5' |
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21404 | 3' | -53.1 | NC_004812.1 | + | 140099 | 0.73 | 0.667082 |
Target: 5'- -aGCGCGCcCAUGGCGGGC-GCgcgCAg -3' miRNA: 3'- caUGCGCGaGUACCGCUCGaUGaa-GU- -5' |
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21404 | 3' | -53.1 | NC_004812.1 | + | 88297 | 0.75 | 0.572546 |
Target: 5'- -gAgGCGCUCugcGGCGAGCUGCUg-- -3' miRNA: 3'- caUgCGCGAGua-CCGCUCGAUGAagu -5' |
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21404 | 3' | -53.1 | NC_004812.1 | + | 116191 | 0.75 | 0.551831 |
Target: 5'- ---aGCGC-CGUGGCGGGCUACUa-- -3' miRNA: 3'- caugCGCGaGUACCGCUCGAUGAagu -5' |
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21404 | 3' | -53.1 | NC_004812.1 | + | 4353 | 0.66 | 0.971549 |
Target: 5'- -gGCG-GCUCAUGGCGAcgGCgGCggCGg -3' miRNA: 3'- caUGCgCGAGUACCGCU--CGaUGaaGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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