miRNA display CGI


Results 1 - 20 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21404 5' -59.1 NC_004812.1 + 50514 0.65 0.818593
Target:  5'- aCCCGc-GCGCUGcucuccACCGCCGuaaacaacaugauGCUGCGc -3'
miRNA:   3'- -GGGCacCGCGACa-----UGGUGGU-------------CGACGC- -5'
21404 5' -59.1 NC_004812.1 + 50045 0.66 0.793595
Target:  5'- cCCCcUGGCGauuaacgUGgACCACCGcgcccGCUGCGa -3'
miRNA:   3'- -GGGcACCGCg------ACaUGGUGGU-----CGACGC- -5'
21404 5' -59.1 NC_004812.1 + 129349 0.66 0.793595
Target:  5'- cCCCGcgcaGGCGCaUG-AgCACCAGC-GCGu -3'
miRNA:   3'- -GGGCa---CCGCG-ACaUgGUGGUCGaCGC- -5'
21404 5' -59.1 NC_004812.1 + 154794 0.66 0.810971
Target:  5'- cCCCGacggGGCgGCcccgacGU-CCGCCAuGCUGCGg -3'
miRNA:   3'- -GGGCa---CCG-CGa-----CAuGGUGGU-CGACGC- -5'
21404 5' -59.1 NC_004812.1 + 72248 0.66 0.784695
Target:  5'- gUCCGgucggcgGGCGCgagacuggACCGCCGGCU-CGg -3'
miRNA:   3'- -GGGCa------CCGCGaca-----UGGUGGUCGAcGC- -5'
21404 5' -59.1 NC_004812.1 + 79634 0.66 0.784695
Target:  5'- gCCGUGGCcgGCg--GCC-CCGGCccgGCGg -3'
miRNA:   3'- gGGCACCG--CGacaUGGuGGUCGa--CGC- -5'
21404 5' -59.1 NC_004812.1 + 46441 0.66 0.793595
Target:  5'- cCCUG-GGCGCUGgcGCUggGCCAGgcgcuCUGCGu -3'
miRNA:   3'- -GGGCaCCGCGACa-UGG--UGGUC-----GACGC- -5'
21404 5' -59.1 NC_004812.1 + 49300 0.66 0.792711
Target:  5'- cCUCGaGGCGCUGUG-CGCCAacuacguaggcccGCUGUa -3'
miRNA:   3'- -GGGCaCCGCGACAUgGUGGU-------------CGACGc -5'
21404 5' -59.1 NC_004812.1 + 109347 0.66 0.801486
Target:  5'- aCCGgGGCGCcGUagacucgGCCACCGGgaUGCu -3'
miRNA:   3'- gGGCaCCGCGaCA-------UGGUGGUCg-ACGc -5'
21404 5' -59.1 NC_004812.1 + 129689 0.66 0.775665
Target:  5'- gCCCGcGGCGCcGUACCcgGCgGGaacgGCGg -3'
miRNA:   3'- -GGGCaCCGCGaCAUGG--UGgUCga--CGC- -5'
21404 5' -59.1 NC_004812.1 + 113404 0.66 0.802356
Target:  5'- -aCGcUGGCGCUGcacgGCC-CCAGcCUGUa -3'
miRNA:   3'- ggGC-ACCGCGACa---UGGuGGUC-GACGc -5'
21404 5' -59.1 NC_004812.1 + 147516 0.66 0.784695
Target:  5'- cCCCGaGGCGCcGUcuucgcGCCGCCgccuggacgGGCgGCGg -3'
miRNA:   3'- -GGGCaCCGCGaCA------UGGUGG---------UCGaCGC- -5'
21404 5' -59.1 NC_004812.1 + 94365 0.66 0.793595
Target:  5'- cCCCG-GcGCGCUGguuUGCC-CUGGCgGCGg -3'
miRNA:   3'- -GGGCaC-CGCGAC---AUGGuGGUCGaCGC- -5'
21404 5' -59.1 NC_004812.1 + 58326 0.66 0.784695
Target:  5'- gCCGgGGUGCUcgucgaucgcGU-CCACCAGCgcGCGg -3'
miRNA:   3'- gGGCaCCGCGA----------CAuGGUGGUCGa-CGC- -5'
21404 5' -59.1 NC_004812.1 + 17561 0.66 0.779292
Target:  5'- -gCGUGGCGUauaacccgcaggggGUccucGCCGCCGGCUGgGc -3'
miRNA:   3'- ggGCACCGCGa-------------CA----UGGUGGUCGACgC- -5'
21404 5' -59.1 NC_004812.1 + 148407 0.66 0.793595
Target:  5'- uUCGUgucuGGCGC-GUGCCugCGGggGCGg -3'
miRNA:   3'- gGGCA----CCGCGaCAUGGugGUCgaCGC- -5'
21404 5' -59.1 NC_004812.1 + 24906 0.66 0.799743
Target:  5'- cCUCGUcgagGGUGCgGUGCCuuccgaugaaggucACCAGgUGCGg -3'
miRNA:   3'- -GGGCA----CCGCGaCAUGG--------------UGGUCgACGC- -5'
21404 5' -59.1 NC_004812.1 + 119353 0.66 0.784695
Target:  5'- cCCUGgcgggcGGCGCgccUGCCGCCcccuGCUGCc -3'
miRNA:   3'- -GGGCa-----CCGCGac-AUGGUGGu---CGACGc -5'
21404 5' -59.1 NC_004812.1 + 28944 0.66 0.802356
Target:  5'- gCCCGgGGaCGUcGUGCC-CCAGCgcaacGCGu -3'
miRNA:   3'- -GGGCaCC-GCGaCAUGGuGGUCGa----CGC- -5'
21404 5' -59.1 NC_004812.1 + 99190 0.66 0.775665
Target:  5'- cCCCGUGGUGCcGcccgGCCcccgguCCAGgUGCc -3'
miRNA:   3'- -GGGCACCGCGaCa---UGGu-----GGUCgACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.