miRNA display CGI


Results 1 - 20 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21404 5' -59.1 NC_004812.1 + 143 0.69 0.640294
Target:  5'- gCgCGUGGCGCcGcGCCGCCGcGCccGCGg -3'
miRNA:   3'- -GgGCACCGCGaCaUGGUGGU-CGa-CGC- -5'
21404 5' -59.1 NC_004812.1 + 580 0.68 0.699747
Target:  5'- uCCCGcGGCGCg--GCCcCCGGCcccggGCGu -3'
miRNA:   3'- -GGGCaCCGCGacaUGGuGGUCGa----CGC- -5'
21404 5' -59.1 NC_004812.1 + 1245 0.68 0.671145
Target:  5'- gCCCGggcGGCGCcgcggccgcccguugGU-CCGCCGGCcGCGg -3'
miRNA:   3'- -GGGCa--CCGCGa--------------CAuGGUGGUCGaCGC- -5'
21404 5' -59.1 NC_004812.1 + 2591 0.66 0.802356
Target:  5'- gCCCGaGGCGC-GUGCgCGCgCGGUaGCGc -3'
miRNA:   3'- -GGGCaCCGCGaCAUG-GUG-GUCGaCGC- -5'
21404 5' -59.1 NC_004812.1 + 3633 0.67 0.766513
Target:  5'- gCCGgcgGGCGCgcgGcGCCGCCcGCgucUGCGu -3'
miRNA:   3'- gGGCa--CCGCGa--CaUGGUGGuCG---ACGC- -5'
21404 5' -59.1 NC_004812.1 + 3735 0.67 0.757247
Target:  5'- aCC-UGGCGCgGgccGCgCGCCAGCaGCGg -3'
miRNA:   3'- gGGcACCGCGaCa--UG-GUGGUCGaCGC- -5'
21404 5' -59.1 NC_004812.1 + 3841 0.66 0.793595
Target:  5'- cCCCGcgcaGGCGCaUG-AgCACCAGC-GCGu -3'
miRNA:   3'- -GGGCa---CCGCG-ACaUgGUGGUCGaCGC- -5'
21404 5' -59.1 NC_004812.1 + 4180 0.66 0.775665
Target:  5'- gCCCGcGGCGCcGUACCcgGCgGGaacgGCGg -3'
miRNA:   3'- -GGGCaCCGCGaCAUGG--UGgUCga--CGC- -5'
21404 5' -59.1 NC_004812.1 + 4879 0.68 0.660219
Target:  5'- gCCCGUGGCGUcGcGCCcgGCCacGGCgGCGc -3'
miRNA:   3'- -GGGCACCGCGaCaUGG--UGG--UCGaCGC- -5'
21404 5' -59.1 NC_004812.1 + 4933 0.73 0.396603
Target:  5'- gCCCGcggaggcGGCGCUGgaggGCgGCCGGCggGCGg -3'
miRNA:   3'- -GGGCa------CCGCGACa---UGgUGGUCGa-CGC- -5'
21404 5' -59.1 NC_004812.1 + 8020 0.66 0.775665
Target:  5'- cCCCGgggGGCGCgGgccggccuCCGCCGGCaccccccgGCGc -3'
miRNA:   3'- -GGGCa--CCGCGaCau------GGUGGUCGa-------CGC- -5'
21404 5' -59.1 NC_004812.1 + 8591 0.67 0.73841
Target:  5'- aCCgGUGGCGC---GCCGCCcggaGGCcGCGc -3'
miRNA:   3'- -GGgCACCGCGacaUGGUGG----UCGaCGC- -5'
21404 5' -59.1 NC_004812.1 + 9765 0.66 0.810971
Target:  5'- gCCCGcGGCGC---GCCGgCGGCcGCGc -3'
miRNA:   3'- -GGGCaCCGCGacaUGGUgGUCGaCGC- -5'
21404 5' -59.1 NC_004812.1 + 11051 0.68 0.680058
Target:  5'- gCCgGUGGCGCccgACCccgggACCAGC-GCGa -3'
miRNA:   3'- -GGgCACCGCGacaUGG-----UGGUCGaCGC- -5'
21404 5' -59.1 NC_004812.1 + 11978 0.68 0.680058
Target:  5'- uCCCGcgggGGCGggGUuCCGCCGGCggGCu -3'
miRNA:   3'- -GGGCa---CCGCgaCAuGGUGGUCGa-CGc -5'
21404 5' -59.1 NC_004812.1 + 13132 0.71 0.484463
Target:  5'- gCUCG-GGCGgUgGUGCCGCCGGCgacaGCGa -3'
miRNA:   3'- -GGGCaCCGCgA-CAUGGUGGUCGa---CGC- -5'
21404 5' -59.1 NC_004812.1 + 13353 0.67 0.71922
Target:  5'- gUCGUuccGCGCc--ACCACCAGCUGCu -3'
miRNA:   3'- gGGCAc--CGCGacaUGGUGGUCGACGc -5'
21404 5' -59.1 NC_004812.1 + 14120 0.67 0.73841
Target:  5'- gCCGU-GCGUgaacGCCGCCAGCcGCGu -3'
miRNA:   3'- gGGCAcCGCGaca-UGGUGGUCGaCGC- -5'
21404 5' -59.1 NC_004812.1 + 15509 0.67 0.766513
Target:  5'- cCCCGccgcggggagUGGCGCgugcGUGaccCCGCCGGC-GCGc -3'
miRNA:   3'- -GGGC----------ACCGCGa---CAU---GGUGGUCGaCGC- -5'
21404 5' -59.1 NC_004812.1 + 15964 0.68 0.709515
Target:  5'- gCgCGUGGCGCc--GCCGCgCGGCgGCGc -3'
miRNA:   3'- -GgGCACCGCGacaUGGUG-GUCGaCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.