miRNA display CGI


Results 1 - 20 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21404 5' -59.1 NC_004812.1 + 119850 1.1 0.00126
Target:  5'- uCCCGUGGCGCUGUACCACCAGCUGCGg -3'
miRNA:   3'- -GGGCACCGCGACAUGGUGGUCGACGC- -5'
21404 5' -59.1 NC_004812.1 + 108728 0.78 0.205543
Target:  5'- gCUCGUGGCGCgcUACUACCuGCUGCa -3'
miRNA:   3'- -GGGCACCGCGacAUGGUGGuCGACGc -5'
21404 5' -59.1 NC_004812.1 + 17083 0.78 0.220886
Target:  5'- cCCCGUGGCGCUGUccCCGCCccccucucguGGCaaugGCGg -3'
miRNA:   3'- -GGGCACCGCGACAu-GGUGG----------UCGa---CGC- -5'
21404 5' -59.1 NC_004812.1 + 37746 0.76 0.266604
Target:  5'- cCCCGgGaGCGUgaaGUccACCACCAGCUGCGc -3'
miRNA:   3'- -GGGCaC-CGCGa--CA--UGGUGGUCGACGC- -5'
21404 5' -59.1 NC_004812.1 + 137474 0.75 0.305017
Target:  5'- cCCCGcGGCGCUG-GCCGCCcacgccgAGCUGgCGg -3'
miRNA:   3'- -GGGCaCCGCGACaUGGUGG-------UCGAC-GC- -5'
21404 5' -59.1 NC_004812.1 + 117184 0.75 0.326122
Target:  5'- aCCGgcgaGGCGCUcgacgggacccgcGUcggcacgcACCGCCAGCUGCGg -3'
miRNA:   3'- gGGCa---CCGCGA-------------CA--------UGGUGGUCGACGC- -5'
21404 5' -59.1 NC_004812.1 + 131263 0.74 0.34153
Target:  5'- gCCCGUGGuCGCcGcccACCGCCGGCUGg- -3'
miRNA:   3'- -GGGCACC-GCGaCa--UGGUGGUCGACgc -5'
21404 5' -59.1 NC_004812.1 + 48040 0.74 0.356687
Target:  5'- gCCCGagcggGGCGCgc-GCCACCAGCgaGCGc -3'
miRNA:   3'- -GGGCa----CCGCGacaUGGUGGUCGa-CGC- -5'
21404 5' -59.1 NC_004812.1 + 106440 0.73 0.38352
Target:  5'- aUCGcGGCGCUGgcgGCCGucuccagcacgcgcuCCAGCUGCGc -3'
miRNA:   3'- gGGCaCCGCGACa--UGGU---------------GGUCGACGC- -5'
21404 5' -59.1 NC_004812.1 + 4933 0.73 0.396603
Target:  5'- gCCCGcggaggcGGCGCUGgaggGCgGCCGGCggGCGg -3'
miRNA:   3'- -GGGCa------CCGCGACa---UGgUGGUCGa-CGC- -5'
21404 5' -59.1 NC_004812.1 + 90185 0.73 0.396603
Target:  5'- cCCCGUGGCGCUGcccuuCgACCuGgaGCGc -3'
miRNA:   3'- -GGGCACCGCGACau---GgUGGuCgaCGC- -5'
21404 5' -59.1 NC_004812.1 + 130441 0.73 0.396603
Target:  5'- gCCCGcggaggcGGCGCUGgaggGCgGCCGGCggGCGg -3'
miRNA:   3'- -GGGCa------CCGCGACa---UGgUGGUCGa-CGC- -5'
21404 5' -59.1 NC_004812.1 + 67632 0.73 0.396603
Target:  5'- gCCGUGGCcagggacgGCUGgggccccugGCCGCCGGCcGCGc -3'
miRNA:   3'- gGGCACCG--------CGACa--------UGGUGGUCGaCGC- -5'
21404 5' -59.1 NC_004812.1 + 56888 0.73 0.413355
Target:  5'- gCCCG-GGC-CUGUGCgGCCAGCccuggGCGc -3'
miRNA:   3'- -GGGCaCCGcGACAUGgUGGUCGa----CGC- -5'
21404 5' -59.1 NC_004812.1 + 74051 0.72 0.428799
Target:  5'- aCCUGUcGGCGCUGgagggcuuccugGCCACgGGCgGCGc -3'
miRNA:   3'- -GGGCA-CCGCGACa-----------UGGUGgUCGaCGC- -5'
21404 5' -59.1 NC_004812.1 + 94289 0.72 0.44724
Target:  5'- gCCCG-GGCGUgcgccuggGUGCgcuugguCGCCGGCUGCGc -3'
miRNA:   3'- -GGGCaCCGCGa-------CAUG-------GUGGUCGACGC- -5'
21404 5' -59.1 NC_004812.1 + 100384 0.72 0.457073
Target:  5'- gCCGgggGGCGCgagGCCACCGGCcggaggucgaUGCGc -3'
miRNA:   3'- gGGCa--CCGCGacaUGGUGGUCG----------ACGC- -5'
21404 5' -59.1 NC_004812.1 + 16174 0.72 0.466113
Target:  5'- gCCCGacugggGGCGCUcgAUCGCCAGCaGCGc -3'
miRNA:   3'- -GGGCa-----CCGCGAcaUGGUGGUCGaCGC- -5'
21404 5' -59.1 NC_004812.1 + 76444 0.72 0.466113
Target:  5'- gCCCGcGGCGCUGU-CCGCgAGg-GCGa -3'
miRNA:   3'- -GGGCaCCGCGACAuGGUGgUCgaCGC- -5'
21404 5' -59.1 NC_004812.1 + 99796 0.72 0.475244
Target:  5'- gUUGUgcGGCGC---GCCGCCAGCUGCGc -3'
miRNA:   3'- gGGCA--CCGCGacaUGGUGGUCGACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.