miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21406 5' -50.5 NC_004812.1 + 105487 0.66 0.99493
Target:  5'- gGACggaGCAggcGACCGGGCcCggCGGCCGa -3'
miRNA:   3'- -UUGa--UGUa--CUGGUUCGaGuaGCUGGC- -5'
21406 5' -50.5 NC_004812.1 + 96585 0.66 0.99493
Target:  5'- -cCUGCAccUGACCGAGgUCGaCGacGCCGg -3'
miRNA:   3'- uuGAUGU--ACUGGUUCgAGUaGC--UGGC- -5'
21406 5' -50.5 NC_004812.1 + 59479 0.66 0.9941
Target:  5'- -cCUGCAUGAcggcCCGGGC-CGucUCGGCCa -3'
miRNA:   3'- uuGAUGUACU----GGUUCGaGU--AGCUGGc -5'
21406 5' -50.5 NC_004812.1 + 75543 0.66 0.992112
Target:  5'- ---cGCGUGGCCGAGUUCGUCcgggaGCUGc -3'
miRNA:   3'- uugaUGUACUGGUUCGAGUAGc----UGGC- -5'
21406 5' -50.5 NC_004812.1 + 44003 0.66 0.992112
Target:  5'- uGC-ACAUGGCCGaggccagcaggaGGCUCcggCGGCCGc -3'
miRNA:   3'- uUGaUGUACUGGU------------UCGAGua-GCUGGC- -5'
21406 5' -50.5 NC_004812.1 + 81540 0.66 0.992112
Target:  5'- cGCUcgGUGGCgGAGaUCGUCGACCa -3'
miRNA:   3'- uUGAugUACUGgUUCgAGUAGCUGGc -5'
21406 5' -50.5 NC_004812.1 + 22263 0.66 0.990936
Target:  5'- gGGCcgACGcgGugCAGGCUC-UCGACCu -3'
miRNA:   3'- -UUGa-UGUa-CugGUUCGAGuAGCUGGc -5'
21406 5' -50.5 NC_004812.1 + 33762 0.66 0.990936
Target:  5'- -cCUGCG-GGCCcucacGGGCUCggCGGCCGa -3'
miRNA:   3'- uuGAUGUaCUGG-----UUCGAGuaGCUGGC- -5'
21406 5' -50.5 NC_004812.1 + 39242 0.66 0.990936
Target:  5'- ---cGCGUGGCCAGGCgccCGUUGuCCa -3'
miRNA:   3'- uugaUGUACUGGUUCGa--GUAGCuGGc -5'
21406 5' -50.5 NC_004812.1 + 88301 0.67 0.990167
Target:  5'- gGugUGCAaccUGGCCAgcgucaaccuggcggAGUgcgUCGUCGGCCGg -3'
miRNA:   3'- -UugAUGU---ACUGGU---------------UCG---AGUAGCUGGC- -5'
21406 5' -50.5 NC_004812.1 + 104172 0.67 0.989626
Target:  5'- gGGCUGCugguccUGGCCGGGCUgGcggCGGCCu -3'
miRNA:   3'- -UUGAUGu-----ACUGGUUCGAgUa--GCUGGc -5'
21406 5' -50.5 NC_004812.1 + 18896 0.67 0.989626
Target:  5'- cGCcGCGgaGGCCGAGCUCGUacagGGCCGc -3'
miRNA:   3'- uUGaUGUa-CUGGUUCGAGUAg---CUGGC- -5'
21406 5' -50.5 NC_004812.1 + 53058 0.67 0.989626
Target:  5'- cAGCUGCAccGCCAGGCggcgcUCAagGGCCGc -3'
miRNA:   3'- -UUGAUGUacUGGUUCG-----AGUagCUGGC- -5'
21406 5' -50.5 NC_004812.1 + 123055 0.67 0.988173
Target:  5'- cGGCUugGUGAgCAcgGGCcggucgUCGUCGGCCu -3'
miRNA:   3'- -UUGAugUACUgGU--UCG------AGUAGCUGGc -5'
21406 5' -50.5 NC_004812.1 + 91036 0.67 0.986567
Target:  5'- uGACUcaccGCGUGcCCAGGgUCcUCGGCCa -3'
miRNA:   3'- -UUGA----UGUACuGGUUCgAGuAGCUGGc -5'
21406 5' -50.5 NC_004812.1 + 79008 0.67 0.986567
Target:  5'- cGCUGC-UGGCCGGGgaCGcccgCGACCGc -3'
miRNA:   3'- uUGAUGuACUGGUUCgaGUa---GCUGGC- -5'
21406 5' -50.5 NC_004812.1 + 123572 0.67 0.984799
Target:  5'- aGGCgGCGcGGCCGGGCUCGagUCGuCCGu -3'
miRNA:   3'- -UUGaUGUaCUGGUUCGAGU--AGCuGGC- -5'
21406 5' -50.5 NC_004812.1 + 129104 0.67 0.984799
Target:  5'- gAGCU-CGUGGCCAcccuGCUCGUgggCGACUGc -3'
miRNA:   3'- -UUGAuGUACUGGUu---CGAGUA---GCUGGC- -5'
21406 5' -50.5 NC_004812.1 + 154473 0.67 0.984799
Target:  5'- aGGCgGCGcGGCCGGGCUCGagUCGuCCGu -3'
miRNA:   3'- -UUGaUGUaCUGGUUCGAGU--AGCuGGC- -5'
21406 5' -50.5 NC_004812.1 + 16141 0.67 0.984799
Target:  5'- cAGCUGCGcGACCGGGa-CAUCGAgcuCCGg -3'
miRNA:   3'- -UUGAUGUaCUGGUUCgaGUAGCU---GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.