miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21407 3' -55.8 NC_004812.1 + 1939 0.66 0.910675
Target:  5'- ---gGGCGcUCCGCCCgUcgGGGGGACg -3'
miRNA:   3'- uuugCUGUcAGGCGGGgA--UCCCUUGg -5'
21407 3' -55.8 NC_004812.1 + 77748 0.66 0.918855
Target:  5'- gGGGCGGCc-UCCGCCCUccccgggcuccucgGGGGAcACCg -3'
miRNA:   3'- -UUUGCUGucAGGCGGGGa-------------UCCCU-UGG- -5'
21407 3' -55.8 NC_004812.1 + 65744 0.66 0.922217
Target:  5'- gAGACGGCGaUCCGCCuCCgc-GGcGCCg -3'
miRNA:   3'- -UUUGCUGUcAGGCGG-GGaucCCuUGG- -5'
21407 3' -55.8 NC_004812.1 + 122196 0.66 0.908252
Target:  5'- uGGugGGCGGgcugucugggcgCCGCCCCgggggcgggcgcGGGGGGCUc -3'
miRNA:   3'- -UUugCUGUCa-----------GGCGGGGa-----------UCCCUUGG- -5'
21407 3' -55.8 NC_004812.1 + 103505 0.66 0.914823
Target:  5'- -cGCGACGGccgcgcggagcaucUCCugcagGUCCCUGGGGcGGCCc -3'
miRNA:   3'- uuUGCUGUC--------------AGG-----CGGGGAUCCC-UUGG- -5'
21407 3' -55.8 NC_004812.1 + 97086 0.66 0.910675
Target:  5'- cGAGCGccuCGGcuaCCGCCCCcuguccgccGGGGGCCg -3'
miRNA:   3'- -UUUGCu--GUCa--GGCGGGGau-------CCCUUGG- -5'
21407 3' -55.8 NC_004812.1 + 75464 0.66 0.910675
Target:  5'- gAGGCgGACGGUCUGCUCCgcGGccgcGGCCa -3'
miRNA:   3'- -UUUG-CUGUCAGGCGGGGauCCc---UUGG- -5'
21407 3' -55.8 NC_004812.1 + 101916 0.66 0.916565
Target:  5'- -cGCGGCGGUCgGgCCUcGGGGccCCg -3'
miRNA:   3'- uuUGCUGUCAGgCgGGGaUCCCuuGG- -5'
21407 3' -55.8 NC_004812.1 + 52103 0.66 0.922217
Target:  5'- cGACGACcGcCCGUCCCgcGGGccGAUCg -3'
miRNA:   3'- uUUGCUGuCaGGCGGGGauCCC--UUGG- -5'
21407 3' -55.8 NC_004812.1 + 103275 0.66 0.91306
Target:  5'- gGGGCGACGG-CCGCCCCccgcacgcugacGGuGCCg -3'
miRNA:   3'- -UUUGCUGUCaGGCGGGGauc---------CCuUGG- -5'
21407 3' -55.8 NC_004812.1 + 72682 0.66 0.904548
Target:  5'- cGGCGAgAacGUCCGCgCC-GGGGGACa -3'
miRNA:   3'- uUUGCUgU--CAGGCGgGGaUCCCUUGg -5'
21407 3' -55.8 NC_004812.1 + 32019 0.66 0.922217
Target:  5'- --nCGAacCGG-CCGCCCCccGGGGGCUc -3'
miRNA:   3'- uuuGCU--GUCaGGCGGGGauCCCUUGG- -5'
21407 3' -55.8 NC_004812.1 + 58938 0.66 0.898186
Target:  5'- --uCGGCGGgggCCGCCuggCCUGccgugaggcuGGGGGCCg -3'
miRNA:   3'- uuuGCUGUCa--GGCGG---GGAU----------CCCUUGG- -5'
21407 3' -55.8 NC_004812.1 + 83980 0.66 0.898186
Target:  5'- gGGGCGucGCGGcCCGgCCCUccuuGGGGGGCg -3'
miRNA:   3'- -UUUGC--UGUCaGGCgGGGA----UCCCUUGg -5'
21407 3' -55.8 NC_004812.1 + 72072 0.66 0.902664
Target:  5'- gGGGCGGCGGcuguuucgCCGCCCCcgagcucguuugggcGGGGGCUg -3'
miRNA:   3'- -UUUGCUGUCa-------GGCGGGGau-------------CCCUUGG- -5'
21407 3' -55.8 NC_004812.1 + 1383 0.66 0.904548
Target:  5'- -cGCGACGGcCCGCCCCgc----GCCg -3'
miRNA:   3'- uuUGCUGUCaGGCGGGGaucccuUGG- -5'
21407 3' -55.8 NC_004812.1 + 150705 0.66 0.897537
Target:  5'- -cGCGGCGGcUCCGCCCgCcGGcGGAcgggguauaugagGCCg -3'
miRNA:   3'- uuUGCUGUC-AGGCGGG-GaUC-CCU-------------UGG- -5'
21407 3' -55.8 NC_004812.1 + 97230 0.66 0.910675
Target:  5'- -uGCGugGGgccUCGCgCCCUGcGGGGCCg -3'
miRNA:   3'- uuUGCugUCa--GGCG-GGGAUcCCUUGG- -5'
21407 3' -55.8 NC_004812.1 + 80799 0.66 0.904548
Target:  5'- -cAUGACGG-CCagGCCCUgGGGGGACa -3'
miRNA:   3'- uuUGCUGUCaGG--CGGGGaUCCCUUGg -5'
21407 3' -55.8 NC_004812.1 + 99074 0.66 0.904548
Target:  5'- --uCGACGGUcCCGCaCgUGGcGGAGCCc -3'
miRNA:   3'- uuuGCUGUCA-GGCGgGgAUC-CCUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.