miRNA display CGI


Results 1 - 20 of 191 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21407 3' -55.8 NC_004812.1 + 1268 0.67 0.86298
Target:  5'- -uGCGACGGgcagauUCCgGCCCCcAGGGucCCc -3'
miRNA:   3'- uuUGCUGUC------AGG-CGGGGaUCCCuuGG- -5'
21407 3' -55.8 NC_004812.1 + 1383 0.66 0.904548
Target:  5'- -cGCGACGGcCCGCCCCgc----GCCg -3'
miRNA:   3'- uuUGCUGUCaGGCGGGGaucccuUGG- -5'
21407 3' -55.8 NC_004812.1 + 1676 0.68 0.813953
Target:  5'- cGGCGccGCGGcCCGCCCgCggcgGGGGAugCc -3'
miRNA:   3'- uUUGC--UGUCaGGCGGG-Ga---UCCCUugG- -5'
21407 3' -55.8 NC_004812.1 + 1815 0.74 0.507992
Target:  5'- cGGACGuCGGggCCGCCCCgucgggggAGGGGACa -3'
miRNA:   3'- -UUUGCuGUCa-GGCGGGGa-------UCCCUUGg -5'
21407 3' -55.8 NC_004812.1 + 1939 0.66 0.910675
Target:  5'- ---gGGCGcUCCGCCCgUcgGGGGGACg -3'
miRNA:   3'- uuugCUGUcAGGCGGGgA--UCCCUUGg -5'
21407 3' -55.8 NC_004812.1 + 2893 0.67 0.877725
Target:  5'- cGugGACuucaucuggguGGaCCGCCCg-GGGGAGCCc -3'
miRNA:   3'- uUugCUG-----------UCaGGCGGGgaUCCCUUGG- -5'
21407 3' -55.8 NC_004812.1 + 5715 0.7 0.719993
Target:  5'- gGGGCGGgGGUCUGCCgCgggaggAGGGcGCCg -3'
miRNA:   3'- -UUUGCUgUCAGGCGGgGa-----UCCCuUGG- -5'
21407 3' -55.8 NC_004812.1 + 5926 0.7 0.700001
Target:  5'- -cGCGACg--CCGCCCCggagcgcgGGGGcGACCg -3'
miRNA:   3'- uuUGCUGucaGGCGGGGa-------UCCC-UUGG- -5'
21407 3' -55.8 NC_004812.1 + 5955 0.68 0.831039
Target:  5'- --nCGGCGGcUCCGCCCCgucgAGGaucucauuauGGGCCc -3'
miRNA:   3'- uuuGCUGUC-AGGCGGGGa---UCC----------CUUGG- -5'
21407 3' -55.8 NC_004812.1 + 6017 0.76 0.406728
Target:  5'- -cGCGGCGGcgCCGCCCCgucGaGGAGCCc -3'
miRNA:   3'- uuUGCUGUCa-GGCGGGGau-C-CCUUGG- -5'
21407 3' -55.8 NC_004812.1 + 6246 0.68 0.813953
Target:  5'- -cGCGGCcGUCuCGCgCCCgcggucgggGGGGAGCUa -3'
miRNA:   3'- uuUGCUGuCAG-GCG-GGGa--------UCCCUUGG- -5'
21407 3' -55.8 NC_004812.1 + 6353 0.71 0.689914
Target:  5'- gGGGCGGCAGgcgcgCCGCCCgCcAGGGAcGCg -3'
miRNA:   3'- -UUUGCUGUCa----GGCGGG-GaUCCCU-UGg -5'
21407 3' -55.8 NC_004812.1 + 6428 0.73 0.567537
Target:  5'- --cCGuACAGcCCGCCCggcgGGGGGACCg -3'
miRNA:   3'- uuuGC-UGUCaGGCGGGga--UCCCUUGG- -5'
21407 3' -55.8 NC_004812.1 + 7438 0.74 0.488717
Target:  5'- uAGGCGACcgGGgacgCCGCCCCUcgccuccgcGGGGACCg -3'
miRNA:   3'- -UUUGCUG--UCa---GGCGGGGAu--------CCCUUGG- -5'
21407 3' -55.8 NC_004812.1 + 8249 0.79 0.258531
Target:  5'- --cCGGgGGUCCGCCCCcgGGGGcGCCg -3'
miRNA:   3'- uuuGCUgUCAGGCGGGGa-UCCCuUGG- -5'
21407 3' -55.8 NC_004812.1 + 8846 0.67 0.891593
Target:  5'- cGGCGACcccgCGUCCCgcGGGAGCCc -3'
miRNA:   3'- uUUGCUGucagGCGGGGauCCCUUGG- -5'
21407 3' -55.8 NC_004812.1 + 10733 0.7 0.749393
Target:  5'- -cACGcucGCGGUCCucGCCuCCUGGGGAugggcguucgcGCCg -3'
miRNA:   3'- uuUGC---UGUCAGG--CGG-GGAUCCCU-----------UGG- -5'
21407 3' -55.8 NC_004812.1 + 12969 0.68 0.847401
Target:  5'- cGAACGGCGcUCCGCgCCC---GGGGCCg -3'
miRNA:   3'- -UUUGCUGUcAGGCG-GGGaucCCUUGG- -5'
21407 3' -55.8 NC_004812.1 + 14075 0.74 0.52758
Target:  5'- gAAACcccaGCAG-CCGCCCCaucGGGAACCg -3'
miRNA:   3'- -UUUGc---UGUCaGGCGGGGau-CCCUUGG- -5'
21407 3' -55.8 NC_004812.1 + 15521 0.67 0.86298
Target:  5'- gAGACGACg--CCGCCUCUcgAGcGAACCg -3'
miRNA:   3'- -UUUGCUGucaGGCGGGGA--UCcCUUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.