miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21407 3' -55.8 NC_004812.1 + 6353 0.71 0.689914
Target:  5'- gGGGCGGCAGgcgcgCCGCCCgCcAGGGAcGCg -3'
miRNA:   3'- -UUUGCUGUCa----GGCGGG-GaUCCCU-UGg -5'
21407 3' -55.8 NC_004812.1 + 17083 0.75 0.469793
Target:  5'- -cGCGAcCAGUCCGCCCaCcGGGGGuucgcguucGCCg -3'
miRNA:   3'- uuUGCU-GUCAGGCGGG-GaUCCCU---------UGG- -5'
21407 3' -55.8 NC_004812.1 + 60952 0.74 0.47921
Target:  5'- gAGACGGCGGUCCccccgaGCCCCgugguGcGGGACCc -3'
miRNA:   3'- -UUUGCUGUCAGG------CGGGGau---C-CCUUGG- -5'
21407 3' -55.8 NC_004812.1 + 132946 0.74 0.488717
Target:  5'- uAGGCGACcgGGgacgCCGCCCCUcgccuccgcGGGGACCg -3'
miRNA:   3'- -UUUGCUG--UCa---GGCGGGGAu--------CCCUUGG- -5'
21407 3' -55.8 NC_004812.1 + 1815 0.74 0.507992
Target:  5'- cGGACGuCGGggCCGCCCCgucgggggAGGGGACa -3'
miRNA:   3'- -UUUGCuGUCa-GGCGGGGa-------UCCCUUGg -5'
21407 3' -55.8 NC_004812.1 + 76366 0.74 0.517749
Target:  5'- -cGCGGCcG-CCGCCCCcAGGGcGCCg -3'
miRNA:   3'- uuUGCUGuCaGGCGGGGaUCCCuUGG- -5'
21407 3' -55.8 NC_004812.1 + 61487 0.74 0.52758
Target:  5'- ---gGACGGUCCGCCCCca--GAGCCg -3'
miRNA:   3'- uuugCUGUCAGGCGGGGauccCUUGG- -5'
21407 3' -55.8 NC_004812.1 + 24485 0.73 0.547443
Target:  5'- --gUGGCGG-CCGCUCCUggacGGGGGGCCc -3'
miRNA:   3'- uuuGCUGUCaGGCGGGGA----UCCCUUGG- -5'
21407 3' -55.8 NC_004812.1 + 6428 0.73 0.567537
Target:  5'- --cCGuACAGcCCGCCCggcgGGGGGACCg -3'
miRNA:   3'- uuuGC-UGUCaGGCGGGga--UCCCUUGG- -5'
21407 3' -55.8 NC_004812.1 + 124222 0.75 0.460473
Target:  5'- -cACGACGGUUgGCUCCgcggcggcGGGGGGCCg -3'
miRNA:   3'- uuUGCUGUCAGgCGGGGa-------UCCCUUGG- -5'
21407 3' -55.8 NC_004812.1 + 151907 0.75 0.45125
Target:  5'- uGGGCGACAG-CCGCCCggggcuCUGGGGcgcGCCg -3'
miRNA:   3'- -UUUGCUGUCaGGCGGG------GAUCCCu--UGG- -5'
21407 3' -55.8 NC_004812.1 + 69735 0.75 0.424208
Target:  5'- aAGGCGGCGGUCCGgCaCCgGGGGGcACCa -3'
miRNA:   3'- -UUUGCUGUCAGGCgG-GGaUCCCU-UGG- -5'
21407 3' -55.8 NC_004812.1 + 8249 0.79 0.258531
Target:  5'- --cCGGgGGUCCGCCCCcgGGGGcGCCg -3'
miRNA:   3'- uuuGCUgUCAGGCGGGGa-UCCCuUGG- -5'
21407 3' -55.8 NC_004812.1 + 120143 0.79 0.264139
Target:  5'- uGGugGGCGGgcgcgaguccuccUCCGCCCCUcuGGGGGGCCc -3'
miRNA:   3'- -UUugCUGUC-------------AGGCGGGGA--UCCCUUGG- -5'
21407 3' -55.8 NC_004812.1 + 120260 0.79 0.264139
Target:  5'- uGGugGGCGGgcgcgaguccucuUCCGCCCCUcuGGGGGGCCc -3'
miRNA:   3'- -UUugCUGUC-------------AGGCGGGGA--UCCCUUGG- -5'
21407 3' -55.8 NC_004812.1 + 85856 0.77 0.340756
Target:  5'- uGGCGACcgggcgaguggcgGGUCUGCUCCUgAGGGGGCCg -3'
miRNA:   3'- uUUGCUG-------------UCAGGCGGGGA-UCCCUUGG- -5'
21407 3' -55.8 NC_004812.1 + 149560 0.77 0.372344
Target:  5'- uAGGCGACGGgggacgCCGCCCCUcgcguccccgGGGGAaaugugcGCCg -3'
miRNA:   3'- -UUUGCUGUCa-----GGCGGGGA----------UCCCU-------UGG- -5'
21407 3' -55.8 NC_004812.1 + 60130 0.76 0.398159
Target:  5'- cAGCGGCGuGUCCuGCCCCUccaGGaGGGGCCa -3'
miRNA:   3'- uUUGCUGU-CAGG-CGGGGA---UC-CCUUGG- -5'
21407 3' -55.8 NC_004812.1 + 73239 0.76 0.406728
Target:  5'- cGGGCgGGCGGcCCGCCCCcAGGcGGGCCg -3'
miRNA:   3'- -UUUG-CUGUCaGGCGGGGaUCC-CUUGG- -5'
21407 3' -55.8 NC_004812.1 + 131526 0.76 0.406728
Target:  5'- -cGCGGCGGcgCCGCCCCgucGaGGAGCCc -3'
miRNA:   3'- uuUGCUGUCa-GGCGGGGau-C-CCUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.