miRNA display CGI


Results 1 - 20 of 748 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21409 5' -66.3 NC_004812.1 + 62410 0.66 0.466234
Target:  5'- gCGGGUcua-CUGCgGGGGGGAGGaGCg -3'
miRNA:   3'- gGCCCGcaccGGCGgCCCCCUUCC-CG- -5'
21409 5' -66.3 NC_004812.1 + 71905 0.66 0.472262
Target:  5'- gCCGGGCGgcgcgGcGCCG-CGGGcgcugcagcggcgaGGAcggcgcGGGGCg -3'
miRNA:   3'- -GGCCCGCa----C-CGGCgGCCC--------------CCU------UCCCG- -5'
21409 5' -66.3 NC_004812.1 + 119506 0.66 0.474857
Target:  5'- --cGGCGUccgcgGGCCGCCGGGcGccccGGGCc -3'
miRNA:   3'- ggcCCGCA-----CCGGCGGCCC-Ccuu-CCCG- -5'
21409 5' -66.3 NC_004812.1 + 30381 0.66 0.474857
Target:  5'- gCCGGGuCGgGGCUcuccuCCGGGGGcgcGGCg -3'
miRNA:   3'- -GGCCC-GCaCCGGc----GGCCCCCuucCCG- -5'
21409 5' -66.3 NC_004812.1 + 104018 0.66 0.465377
Target:  5'- cCCGuGGCGUacggccucggGGCCGUCGcggcgucGGGGAGcucGGCg -3'
miRNA:   3'- -GGC-CCGCA----------CCGGCGGC-------CCCCUUc--CCG- -5'
21409 5' -66.3 NC_004812.1 + 24502 0.66 0.466234
Target:  5'- aCGGG-G-GGCCcccgcGCCGcGGGGGcugcggucGGGGCu -3'
miRNA:   3'- gGCCCgCaCCGG-----CGGC-CCCCU--------UCCCG- -5'
21409 5' -66.3 NC_004812.1 + 93513 0.66 0.475723
Target:  5'- gCCGGGagagaaggagaaggaGgagcGGCCGgaGGGGGccguGGGGGCg -3'
miRNA:   3'- -GGCCCg--------------Ca---CCGGCggCCCCC----UUCCCG- -5'
21409 5' -66.3 NC_004812.1 + 99969 0.66 0.474857
Target:  5'- gUGGGcCGU-GCCGgCGGGGGccaGGCa -3'
miRNA:   3'- gGCCC-GCAcCGGCgGCCCCCuucCCG- -5'
21409 5' -66.3 NC_004812.1 + 72003 0.66 0.46452
Target:  5'- -gGGGCGcggucgucucgcGGUCGCuCGGGGGccGGGa -3'
miRNA:   3'- ggCCCGCa-----------CCGGCG-GCCCCCuuCCCg -5'
21409 5' -66.3 NC_004812.1 + 17619 0.66 0.519089
Target:  5'- cCCGGGCGaaccgcuccGCCGUCGGuGccGGGGCu -3'
miRNA:   3'- -GGCCCGCac-------CGGCGGCCcCcuUCCCG- -5'
21409 5' -66.3 NC_004812.1 + 6607 0.66 0.474857
Target:  5'- gCGGGgGUGgGUgGgUGGGGuGggGGGg -3'
miRNA:   3'- gGCCCgCAC-CGgCgGCCCC-CuuCCCg -5'
21409 5' -66.3 NC_004812.1 + 148921 0.66 0.474857
Target:  5'- aCGGGCGUccGGCgGCgucggcgacgaCGGuGGucGGGGCg -3'
miRNA:   3'- gGCCCGCA--CCGgCG-----------GCC-CCcuUCCCG- -5'
21409 5' -66.3 NC_004812.1 + 72753 0.66 0.483558
Target:  5'- uCCGGG---GGCC-CgGGGGGGucGGGCu -3'
miRNA:   3'- -GGCCCgcaCCGGcGgCCCCCUu-CCCG- -5'
21409 5' -66.3 NC_004812.1 + 106511 0.66 0.466234
Target:  5'- uCCGcGGCGcgGGgCGCCGGcGGccGcGGCg -3'
miRNA:   3'- -GGC-CCGCa-CCgGCGGCCcCCuuC-CCG- -5'
21409 5' -66.3 NC_004812.1 + 116469 0.66 0.483558
Target:  5'- -gGGGCGccGGCCaccCCGGccccuccGGAGGGGCc -3'
miRNA:   3'- ggCCCGCa-CCGGc--GGCCc------CCUUCCCG- -5'
21409 5' -66.3 NC_004812.1 + 60809 0.66 0.473991
Target:  5'- -gGGGCGUaGGCCgagaacccgaacuGCCGGcGGGcgcgcucgcaGAGGcGCg -3'
miRNA:   3'- ggCCCGCA-CCGG-------------CGGCC-CCC----------UUCC-CG- -5'
21409 5' -66.3 NC_004812.1 + 25427 0.66 0.483558
Target:  5'- aCCGcaGGgG-GGUC-CCGGGGGcGGGGUu -3'
miRNA:   3'- -GGC--CCgCaCCGGcGGCCCCCuUCCCG- -5'
21409 5' -66.3 NC_004812.1 + 125298 0.66 0.473991
Target:  5'- gCCGcGcGCGgaaGGCCugcgcgcGUgGGGGGcGGGGCg -3'
miRNA:   3'- -GGC-C-CGCa--CCGG-------CGgCCCCCuUCCCG- -5'
21409 5' -66.3 NC_004812.1 + 30982 0.66 0.474857
Target:  5'- aCGuuGGCgGUGaacgcaaaGCCGCCGGGGaagaccacGAGGGCg -3'
miRNA:   3'- gGC--CCG-CAC--------CGGCGGCCCCc-------UUCCCG- -5'
21409 5' -66.3 NC_004812.1 + 109599 0.66 0.474857
Target:  5'- aUCGGGUGgccaUGGCgCcCCGGGGGcAGGcGUu -3'
miRNA:   3'- -GGCCCGC----ACCG-GcGGCCCCCuUCC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.