miRNA display CGI


Results 1 - 20 of 748 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21409 5' -66.3 NC_004812.1 + 66 0.69 0.313508
Target:  5'- uUGGGCG-GGCUcCCGGGcGGGcucccGGGCg -3'
miRNA:   3'- gGCCCGCaCCGGcGGCCC-CCUu----CCCG- -5'
21409 5' -66.3 NC_004812.1 + 97 0.67 0.457694
Target:  5'- aCGGGCcggGGCgCGCgCGGGGccGGGaGCc -3'
miRNA:   3'- gGCCCGca-CCG-GCG-GCCCCcuUCC-CG- -5'
21409 5' -66.3 NC_004812.1 + 190 0.77 0.096872
Target:  5'- uUCGcGCGcGcGCCGCCGGGGGA-GGGCc -3'
miRNA:   3'- -GGCcCGCaC-CGGCGGCCCCCUuCCCG- -5'
21409 5' -66.3 NC_004812.1 + 726 0.78 0.087867
Target:  5'- gCCGGcGCGgucGCCGgCGGGGGuGGGGGCg -3'
miRNA:   3'- -GGCC-CGCac-CGGCgGCCCCC-UUCCCG- -5'
21409 5' -66.3 NC_004812.1 + 821 0.75 0.138629
Target:  5'- gCCGGGgGUccuggggguccggGGUgGCCGGGGGuccuGGGGUc -3'
miRNA:   3'- -GGCCCgCA-------------CCGgCGGCCCCCu---UCCCG- -5'
21409 5' -66.3 NC_004812.1 + 890 0.78 0.089821
Target:  5'- gCCGGGgGUccuggggguccggGGUCGCCGGGGGuccuGGGGg -3'
miRNA:   3'- -GGCCCgCA-------------CCGGCGGCCCCCu---UCCCg -5'
21409 5' -66.3 NC_004812.1 + 942 0.78 0.089821
Target:  5'- gCCGGGgGUccuggggguccggGGUCGCCGGGGGuccuGGGGg -3'
miRNA:   3'- -GGCCCgCA-------------CCGGCGGCCCCCu---UCCCg -5'
21409 5' -66.3 NC_004812.1 + 985 0.66 0.519089
Target:  5'- uCCGGG-GUcGCCGgggucCUGGGGGuccGGGGUc -3'
miRNA:   3'- -GGCCCgCAcCGGC-----GGCCCCCu--UCCCG- -5'
21409 5' -66.3 NC_004812.1 + 1214 0.67 0.44588
Target:  5'- gCCGGGgGcGG-CGCCGcGGGGGcuccuccccgcccGGGCg -3'
miRNA:   3'- -GGCCCgCaCCgGCGGC-CCCCUu------------CCCG- -5'
21409 5' -66.3 NC_004812.1 + 1284 0.7 0.287898
Target:  5'- gCGGGCG-GGCgGuCCGaGGGcGGuccgAGGGCg -3'
miRNA:   3'- gGCCCGCaCCGgC-GGC-CCC-CU----UCCCG- -5'
21409 5' -66.3 NC_004812.1 + 1412 0.75 0.135695
Target:  5'- cCCGGcccCGacGGCgGCCGcGGGGAGGGGCc -3'
miRNA:   3'- -GGCCc--GCa-CCGgCGGC-CCCCUUCCCG- -5'
21409 5' -66.3 NC_004812.1 + 1803 0.74 0.152744
Target:  5'- gCCGcagcauGGCGgacgucggGGCCGCCccgucGGGGGAGGGGa -3'
miRNA:   3'- -GGC------CCGCa-------CCGGCGG-----CCCCCUUCCCg -5'
21409 5' -66.3 NC_004812.1 + 1935 0.71 0.236345
Target:  5'- gCCgGGGCGcuccGcCCGUCGGGGGGAcGGGUg -3'
miRNA:   3'- -GG-CCCGCac--C-GGCGGCCCCCUU-CCCG- -5'
21409 5' -66.3 NC_004812.1 + 1955 0.76 0.117555
Target:  5'- gCCGcGcGCGcgccGGgCGCCGGGGGGAGGGg -3'
miRNA:   3'- -GGC-C-CGCa---CCgGCGGCCCCCUUCCCg -5'
21409 5' -66.3 NC_004812.1 + 2035 0.7 0.275723
Target:  5'- gCGGGCcucgGUcGGCgGCgGGGGGcgcgggggaGGGGGCg -3'
miRNA:   3'- gGCCCG----CA-CCGgCGgCCCCC---------UUCCCG- -5'
21409 5' -66.3 NC_004812.1 + 2137 0.67 0.440869
Target:  5'- uCCGGG-GaGGCC-CCGcGGGcGGGGCu -3'
miRNA:   3'- -GGCCCgCaCCGGcGGCcCCCuUCCCG- -5'
21409 5' -66.3 NC_004812.1 + 3080 0.71 0.269791
Target:  5'- gUGGGCGgcgGGacgacggCGUgGGGGGGAGGGg -3'
miRNA:   3'- gGCCCGCa--CCg------GCGgCCCCCUUCCCg -5'
21409 5' -66.3 NC_004812.1 + 3236 0.7 0.294143
Target:  5'- gCCGaaGGCGcGGCCggaGCCGGGcucGGgcGGGCc -3'
miRNA:   3'- -GGC--CCGCaCCGG---CGGCCC---CCuuCCCG- -5'
21409 5' -66.3 NC_004812.1 + 3300 0.67 0.4244
Target:  5'- aCCGcGCGUccacccgaGGaggaGCCaGGGGAGGGGCc -3'
miRNA:   3'- -GGCcCGCA--------CCgg--CGGcCCCCUUCCCG- -5'
21409 5' -66.3 NC_004812.1 + 3438 0.73 0.19723
Target:  5'- aCGcGGCGccaGCCGCCGcGGGGGucGGGCc -3'
miRNA:   3'- gGC-CCGCac-CGGCGGC-CCCCUu-CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.