miRNA display CGI


Results 1 - 20 of 748 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21409 5' -66.3 NC_004812.1 + 114474 1.12 0.000282
Target:  5'- cCCGGGCGUGGCCGCCGGGGGAAGGGCg -3'
miRNA:   3'- -GGCCCGCACCGGCGGCCCCCUUCCCG- -5'
21409 5' -66.3 NC_004812.1 + 72333 0.92 0.007838
Target:  5'- gCCGGGCG-GGCCGCgGGGGGGAGGGg -3'
miRNA:   3'- -GGCCCGCaCCGGCGgCCCCCUUCCCg -5'
21409 5' -66.3 NC_004812.1 + 142384 0.9 0.011488
Target:  5'- cCCGGcGCGccgUGGCCGCCGGGGGcGGGGCc -3'
miRNA:   3'- -GGCC-CGC---ACCGGCGGCCCCCuUCCCG- -5'
21409 5' -66.3 NC_004812.1 + 70870 0.86 0.021137
Target:  5'- -gGGGCGUGGCUGCgCGGGGGGggcggggagGGGGCg -3'
miRNA:   3'- ggCCCGCACCGGCG-GCCCCCU---------UCCCG- -5'
21409 5' -66.3 NC_004812.1 + 153188 0.84 0.033307
Target:  5'- gCGcGGCGgcgccggagGGCCGCCGGGGGGAggcGGGCg -3'
miRNA:   3'- gGC-CCGCa--------CCGGCGGCCCCCUU---CCCG- -5'
21409 5' -66.3 NC_004812.1 + 122287 0.84 0.033307
Target:  5'- gCGcGGCGgcgccggagGGCCGCCGGGGGGAggcGGGCg -3'
miRNA:   3'- gGC-CCGCa--------CCGGCGGCCCCCUU---CCCG- -5'
21409 5' -66.3 NC_004812.1 + 27776 0.83 0.038731
Target:  5'- gCGGGCGgcccaGcCCGCCGGGGGAgAGGGCg -3'
miRNA:   3'- gGCCCGCac---C-GGCGGCCCCCU-UCCCG- -5'
21409 5' -66.3 NC_004812.1 + 80365 0.82 0.046158
Target:  5'- gCGGGCcUGGCCGCCugcgaGGGGGAguucgGGGGCc -3'
miRNA:   3'- gGCCCGcACCGGCGG-----CCCCCU-----UCCCG- -5'
21409 5' -66.3 NC_004812.1 + 54864 0.81 0.04975
Target:  5'- cCCGGGgGUGGCgGgCaCGGGGGAcccAGGGCc -3'
miRNA:   3'- -GGCCCgCACCGgC-G-GCCCCCU---UCCCG- -5'
21409 5' -66.3 NC_004812.1 + 152901 0.8 0.057771
Target:  5'- gCCGGGCGggacuUGGgCGCCGGGcGGGAcuuGGGCg -3'
miRNA:   3'- -GGCCCGC-----ACCgGCGGCCC-CCUU---CCCG- -5'
21409 5' -66.3 NC_004812.1 + 152937 0.8 0.057771
Target:  5'- gCCGGGCGggacuUGGgCGCCGGGcGGGAcuuGGGCg -3'
miRNA:   3'- -GGCCCGC-----ACCgGCGGCCC-CCUU---CCCG- -5'
21409 5' -66.3 NC_004812.1 + 122000 0.8 0.057771
Target:  5'- gCCGGGCGggacuUGGgCGCCGGGcGGGAcuuGGGCg -3'
miRNA:   3'- -GGCCCGC-----ACCgGCGGCCC-CCUU---CCCG- -5'
21409 5' -66.3 NC_004812.1 + 122036 0.8 0.057771
Target:  5'- gCCGGGCGggacuUGGgCGCCGGGcGGGAcuuGGGCg -3'
miRNA:   3'- -GGCCCGC-----ACCgGCGGCCC-CCUU---CCCG- -5'
21409 5' -66.3 NC_004812.1 + 115598 0.8 0.059224
Target:  5'- gCGGGCGgcgGGCUGuaGGGGGGuGGGGCg -3'
miRNA:   3'- gGCCCGCa--CCGGCggCCCCCU-UCCCG- -5'
21409 5' -66.3 NC_004812.1 + 62906 0.8 0.0638
Target:  5'- uCCGGGUcaaccGGaCCGCCGGGGGAcggcgguggcgAGGGCg -3'
miRNA:   3'- -GGCCCGca---CC-GGCGGCCCCCU-----------UCCCG- -5'
21409 5' -66.3 NC_004812.1 + 10472 0.79 0.068715
Target:  5'- gCCGGGUGgGGaCCGCgGGGGGGAGucGGCu -3'
miRNA:   3'- -GGCCCGCaCC-GGCGgCCCCCUUC--CCG- -5'
21409 5' -66.3 NC_004812.1 + 103944 0.79 0.068715
Target:  5'- gCaGGCGguuauagagGGCCGCCGGGGGGaccggaacggGGGGCu -3'
miRNA:   3'- gGcCCGCa--------CCGGCGGCCCCCU----------UCCCG- -5'
21409 5' -66.3 NC_004812.1 + 83836 0.79 0.068715
Target:  5'- -aGGGCGcccGGCCGucuCCGGGGGGAGcGGCg -3'
miRNA:   3'- ggCCCGCa--CCGGC---GGCCCCCUUC-CCG- -5'
21409 5' -66.3 NC_004812.1 + 58976 0.79 0.072193
Target:  5'- gCGGGCGggGGUCGCgggucggguuacCGGGGGAGGGGg -3'
miRNA:   3'- gGCCCGCa-CCGGCG------------GCCCCCUUCCCg -5'
21409 5' -66.3 NC_004812.1 + 106692 0.79 0.072193
Target:  5'- aCCGGGCGgucggcgucgGGCC-CCGGGGGGcccucGGGGUc -3'
miRNA:   3'- -GGCCCGCa---------CCGGcGGCCCCCU-----UCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.