miRNA display CGI


Results 21 - 40 of 600 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21410 5' -62 NC_004812.1 + 44205 0.77 0.155947
Target:  5'- -gGCUCGGCGGCGGCGCggaCGGGCGa-- -3'
miRNA:   3'- gaCGAGCCGUUGCCGCG---GCUCGCggu -5'
21410 5' -62 NC_004812.1 + 128393 0.76 0.163795
Target:  5'- -gGC-CGGCGGCGGCGgCGAGCagGCCGa -3'
miRNA:   3'- gaCGaGCCGUUGCCGCgGCUCG--CGGU- -5'
21410 5' -62 NC_004812.1 + 2885 0.76 0.163795
Target:  5'- -gGC-CGGCGGCGGCGgCGAGCagGCCGa -3'
miRNA:   3'- gaCGaGCCGUUGCCGCgGCUCG--CGGU- -5'
21410 5' -62 NC_004812.1 + 42277 0.76 0.170744
Target:  5'- gCUGUUCGGUAGCgcgGGCGCCccgcguccguuccuGGGCGCCGc -3'
miRNA:   3'- -GACGAGCCGUUG---CCGCGG--------------CUCGCGGU- -5'
21410 5' -62 NC_004812.1 + 146320 0.76 0.171579
Target:  5'- -cGCUCaGGCGuCGGCGCCGGcaaacgcGCGCCGu -3'
miRNA:   3'- gaCGAG-CCGUuGCCGCGGCU-------CGCGGU- -5'
21410 5' -62 NC_004812.1 + 155890 0.76 0.171998
Target:  5'- -cGC-CGGCGACcGCGCCG-GCGCCGa -3'
miRNA:   3'- gaCGaGCCGUUGcCGCGGCuCGCGGU- -5'
21410 5' -62 NC_004812.1 + 124989 0.76 0.171998
Target:  5'- -cGC-CGGCGACcGCGCCG-GCGCCGa -3'
miRNA:   3'- gaCGaGCCGUUGcCGCGGCuCGCGGU- -5'
21410 5' -62 NC_004812.1 + 90286 0.76 0.171998
Target:  5'- cCUGCagcgCgGGCGACGGgCGCCuGGGCGCCGc -3'
miRNA:   3'- -GACGa---G-CCGUUGCC-GCGG-CUCGCGGU- -5'
21410 5' -62 NC_004812.1 + 117386 0.76 0.180565
Target:  5'- -aGCgCGGCGGCGGCGCCGGcccgcugcuGCGCUc -3'
miRNA:   3'- gaCGaGCCGUUGCCGCGGCU---------CGCGGu -5'
21410 5' -62 NC_004812.1 + 152433 0.76 0.180565
Target:  5'- -cGC-CGGguACGGCGCCGcgGGCGUCAu -3'
miRNA:   3'- gaCGaGCCguUGCCGCGGC--UCGCGGU- -5'
21410 5' -62 NC_004812.1 + 148287 0.76 0.180565
Target:  5'- -aGCgCGGCGGCGGCGCCGGcccgcugcuGCGCUc -3'
miRNA:   3'- gaCGaGCCGUUGCCGCGGCU---------CGCGGu -5'
21410 5' -62 NC_004812.1 + 90488 0.76 0.184989
Target:  5'- cCUGCgCGGCGGCGGCGCCu-GCGaCCc -3'
miRNA:   3'- -GACGaGCCGUUGCCGCGGcuCGC-GGu -5'
21410 5' -62 NC_004812.1 + 87131 0.75 0.194124
Target:  5'- -gGUUCGGCGGCGGCGCgccaGGGCGUg- -3'
miRNA:   3'- gaCGAGCCGUUGCCGCGg---CUCGCGgu -5'
21410 5' -62 NC_004812.1 + 12900 0.75 0.194124
Target:  5'- -cGCUCGGUgcccccggGGCGGCGCggCGAGCGCUc -3'
miRNA:   3'- gaCGAGCCG--------UUGCCGCG--GCUCGCGGu -5'
21410 5' -62 NC_004812.1 + 115418 0.75 0.198838
Target:  5'- -cGCgCGGCGcgccgaccggcGCGGCGCCGAgaGCGCCu -3'
miRNA:   3'- gaCGaGCCGU-----------UGCCGCGGCU--CGCGGu -5'
21410 5' -62 NC_004812.1 + 96936 0.75 0.198838
Target:  5'- -cGCgcgCGGCAacGCGGCGCCc-GCGCCGg -3'
miRNA:   3'- gaCGa--GCCGU--UGCCGCGGcuCGCGGU- -5'
21410 5' -62 NC_004812.1 + 126990 0.75 0.198838
Target:  5'- --cCUCGGCgGGCGGCgGCgGAGCGCCGg -3'
miRNA:   3'- gacGAGCCG-UUGCCG-CGgCUCGCGGU- -5'
21410 5' -62 NC_004812.1 + 151842 0.75 0.198838
Target:  5'- -cGCcagCGGCGAgccguggccCGGCGCCGAGcCGCCGc -3'
miRNA:   3'- gaCGa--GCCGUU---------GCCGCGGCUC-GCGGU- -5'
21410 5' -62 NC_004812.1 + 1482 0.75 0.198838
Target:  5'- --cCUCGGCgGGCGGCgGCgGAGCGCCGg -3'
miRNA:   3'- gacGAGCCG-UUGCCG-CGgCUCGCGGU- -5'
21410 5' -62 NC_004812.1 + 106164 0.75 0.198838
Target:  5'- -aGCUCGGCcuCGGCgGCCucGCGCCGc -3'
miRNA:   3'- gaCGAGCCGuuGCCG-CGGcuCGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.