miRNA display CGI


Results 1 - 20 of 600 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21410 5' -62 NC_004812.1 + 114098 1.08 0.000983
Target:  5'- gCUGCUCGGCAACGGCGCCGAGCGCCAg -3'
miRNA:   3'- -GACGAGCCGUUGCCGCGGCUCGCGGU- -5'
21410 5' -62 NC_004812.1 + 98539 0.86 0.036089
Target:  5'- gUGCgCGGCcuCGGCGCCGGGCGCCGg -3'
miRNA:   3'- gACGaGCCGuuGCCGCGGCUCGCGGU- -5'
21410 5' -62 NC_004812.1 + 73891 0.82 0.071162
Target:  5'- -aGCUCGGCGgccGCGGcCGCCGAgucGCGCCAg -3'
miRNA:   3'- gaCGAGCCGU---UGCC-GCGGCU---CGCGGU- -5'
21410 5' -62 NC_004812.1 + 19131 0.81 0.078895
Target:  5'- -aGCUCGGCGugGGCgGCC-AGCGCCGc -3'
miRNA:   3'- gaCGAGCCGUugCCG-CGGcUCGCGGU- -5'
21410 5' -62 NC_004812.1 + 141466 0.8 0.096834
Target:  5'- -cGCUCGGCGACGGCugcgacgucGCCGucgggGGCGCCGc -3'
miRNA:   3'- gaCGAGCCGUUGCCG---------CGGC-----UCGCGGU- -5'
21410 5' -62 NC_004812.1 + 56012 0.8 0.096834
Target:  5'- gUGCUCGGCccGGCGGcCGaaGAGCGCCAg -3'
miRNA:   3'- gACGAGCCG--UUGCC-GCggCUCGCGGU- -5'
21410 5' -62 NC_004812.1 + 50467 0.8 0.101115
Target:  5'- -aGCUCGGCcuCGGCgggcgcguguggacGCCGGGCGCCGa -3'
miRNA:   3'- gaCGAGCCGuuGCCG--------------CGGCUCGCGGU- -5'
21410 5' -62 NC_004812.1 + 75767 0.79 0.115634
Target:  5'- -cGuCUCGGCGGCGGCGCCGAaCGCgGg -3'
miRNA:   3'- gaC-GAGCCGUUGCCGCGGCUcGCGgU- -5'
21410 5' -62 NC_004812.1 + 10737 0.78 0.121602
Target:  5'- -gGCggggCGGCAACGGCGgCGAcGCGCCu -3'
miRNA:   3'- gaCGa---GCCGUUGCCGCgGCU-CGCGGu -5'
21410 5' -62 NC_004812.1 + 128865 0.78 0.124692
Target:  5'- -aGCUCGGCGACGacGCGCgGGGCGCa- -3'
miRNA:   3'- gaCGAGCCGUUGC--CGCGgCUCGCGgu -5'
21410 5' -62 NC_004812.1 + 3357 0.78 0.124692
Target:  5'- -aGCUCGGCGACGacGCGCgGGGCGCa- -3'
miRNA:   3'- gaCGAGCCGUUGC--CGCGgCUCGCGgu -5'
21410 5' -62 NC_004812.1 + 129871 0.78 0.127856
Target:  5'- -gGCgaCGGCGGCGGCGgCGuGCGCCAg -3'
miRNA:   3'- gaCGa-GCCGUUGCCGCgGCuCGCGGU- -5'
21410 5' -62 NC_004812.1 + 4363 0.78 0.127856
Target:  5'- -gGCgaCGGCGGCGGCGgCGuGCGCCAg -3'
miRNA:   3'- gaCGa-GCCGUUGCCGCgGCuCGCGGU- -5'
21410 5' -62 NC_004812.1 + 122241 0.78 0.134405
Target:  5'- -gGCUCGGCGGCGGgGCgCGGGCgggggGCCAc -3'
miRNA:   3'- gaCGAGCCGUUGCCgCG-GCUCG-----CGGU- -5'
21410 5' -62 NC_004812.1 + 153142 0.78 0.134405
Target:  5'- -gGCUCGGCGGCGGgGCgCGGGCgggggGCCAc -3'
miRNA:   3'- gaCGAGCCGUUGCCgCG-GCUCG-----CGGU- -5'
21410 5' -62 NC_004812.1 + 81727 0.77 0.140214
Target:  5'- -cGCUCGGCGagacGCGGCGCCGgacggccgcccugcGGCGCUc -3'
miRNA:   3'- gaCGAGCCGU----UGCCGCGGC--------------UCGCGGu -5'
21410 5' -62 NC_004812.1 + 60854 0.77 0.141263
Target:  5'- -gGCUCGGUGugcGCGGcCGCCgcGAGCGCCAg -3'
miRNA:   3'- gaCGAGCCGU---UGCC-GCGG--CUCGCGGU- -5'
21410 5' -62 NC_004812.1 + 36626 0.77 0.141263
Target:  5'- uCUGCcgCGGgagGAgGGCGCCGGGCGCCGc -3'
miRNA:   3'- -GACGa-GCCg--UUgCCGCGGCUCGCGGU- -5'
21410 5' -62 NC_004812.1 + 5725 0.77 0.141263
Target:  5'- uCUGCcgCGGgagGAgGGCGCCGGGCGCCGc -3'
miRNA:   3'- -GACGa-GCCg--UUgCCGCGGCUCGCGGU- -5'
21410 5' -62 NC_004812.1 + 59256 0.77 0.142672
Target:  5'- gCUGCUUGGCGGCGGUGCgcgggaucagggucgCGGGCGCgCGg -3'
miRNA:   3'- -GACGAGCCGUUGCCGCG---------------GCUCGCG-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.