miRNA display CGI


Results 1 - 20 of 600 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21410 5' -62 NC_004812.1 + 76402 0.75 0.203652
Target:  5'- -gGCcCGGCG--GGCGCCGAGgGCCAg -3'
miRNA:   3'- gaCGaGCCGUugCCGCGGCUCgCGGU- -5'
21410 5' -62 NC_004812.1 + 124989 0.76 0.171998
Target:  5'- -cGC-CGGCGACcGCGCCG-GCGCCGa -3'
miRNA:   3'- gaCGaGCCGUUGcCGCGGCuCGCGGU- -5'
21410 5' -62 NC_004812.1 + 117386 0.76 0.180565
Target:  5'- -aGCgCGGCGGCGGCGCCGGcccgcugcuGCGCUc -3'
miRNA:   3'- gaCGaGCCGUUGCCGCGGCU---------CGCGGu -5'
21410 5' -62 NC_004812.1 + 152433 0.76 0.180565
Target:  5'- -cGC-CGGguACGGCGCCGcgGGCGUCAu -3'
miRNA:   3'- gaCGaGCCguUGCCGCGGC--UCGCGGU- -5'
21410 5' -62 NC_004812.1 + 115418 0.75 0.198838
Target:  5'- -cGCgCGGCGcgccgaccggcGCGGCGCCGAgaGCGCCu -3'
miRNA:   3'- gaCGaGCCGU-----------UGCCGCGGCU--CGCGGu -5'
21410 5' -62 NC_004812.1 + 96936 0.75 0.198838
Target:  5'- -cGCgcgCGGCAacGCGGCGCCc-GCGCCGg -3'
miRNA:   3'- gaCGa--GCCGU--UGCCGCGGcuCGCGGU- -5'
21410 5' -62 NC_004812.1 + 126990 0.75 0.198838
Target:  5'- --cCUCGGCgGGCGGCgGCgGAGCGCCGg -3'
miRNA:   3'- gacGAGCCG-UUGCCG-CGgCUCGCGGU- -5'
21410 5' -62 NC_004812.1 + 151842 0.75 0.198838
Target:  5'- -cGCcagCGGCGAgccguggccCGGCGCCGAGcCGCCGc -3'
miRNA:   3'- gaCGa--GCCGUU---------GCCGCGGCUC-GCGGU- -5'
21410 5' -62 NC_004812.1 + 15973 0.75 0.203652
Target:  5'- -cGCcccgCGGcCGGCGGCGCCGAccccgcggccccGCGCCAg -3'
miRNA:   3'- gaCGa---GCC-GUUGCCGCGGCU------------CGCGGU- -5'
21410 5' -62 NC_004812.1 + 146320 0.76 0.171579
Target:  5'- -cGCUCaGGCGuCGGCGCCGGcaaacgcGCGCCGu -3'
miRNA:   3'- gaCGAG-CCGUuGCCGCGGCU-------CGCGGU- -5'
21410 5' -62 NC_004812.1 + 42277 0.76 0.170744
Target:  5'- gCUGUUCGGUAGCgcgGGCGCCccgcguccguuccuGGGCGCCGc -3'
miRNA:   3'- -GACGAGCCGUUG---CCGCGG--------------CUCGCGGU- -5'
21410 5' -62 NC_004812.1 + 128393 0.76 0.163795
Target:  5'- -gGC-CGGCGGCGGCGgCGAGCagGCCGa -3'
miRNA:   3'- gaCGaGCCGUUGCCGCgGCUCG--CGGU- -5'
21410 5' -62 NC_004812.1 + 19131 0.81 0.078895
Target:  5'- -aGCUCGGCGugGGCgGCC-AGCGCCGc -3'
miRNA:   3'- gaCGAGCCGUugCCG-CGGcUCGCGGU- -5'
21410 5' -62 NC_004812.1 + 56012 0.8 0.096834
Target:  5'- gUGCUCGGCccGGCGGcCGaaGAGCGCCAg -3'
miRNA:   3'- gACGAGCCG--UUGCC-GCggCUCGCGGU- -5'
21410 5' -62 NC_004812.1 + 50467 0.8 0.101115
Target:  5'- -aGCUCGGCcuCGGCgggcgcguguggacGCCGGGCGCCGa -3'
miRNA:   3'- gaCGAGCCGuuGCCG--------------CGGCUCGCGGU- -5'
21410 5' -62 NC_004812.1 + 75767 0.79 0.115634
Target:  5'- -cGuCUCGGCGGCGGCGCCGAaCGCgGg -3'
miRNA:   3'- gaC-GAGCCGUUGCCGCGGCUcGCGgU- -5'
21410 5' -62 NC_004812.1 + 128865 0.78 0.124692
Target:  5'- -aGCUCGGCGACGacGCGCgGGGCGCa- -3'
miRNA:   3'- gaCGAGCCGUUGC--CGCGgCUCGCGgu -5'
21410 5' -62 NC_004812.1 + 129871 0.78 0.127856
Target:  5'- -gGCgaCGGCGGCGGCGgCGuGCGCCAg -3'
miRNA:   3'- gaCGa-GCCGUUGCCGCgGCuCGCGGU- -5'
21410 5' -62 NC_004812.1 + 122241 0.78 0.134405
Target:  5'- -gGCUCGGCGGCGGgGCgCGGGCgggggGCCAc -3'
miRNA:   3'- gaCGAGCCGUUGCCgCG-GCUCG-----CGGU- -5'
21410 5' -62 NC_004812.1 + 5725 0.77 0.141263
Target:  5'- uCUGCcgCGGgagGAgGGCGCCGGGCGCCGc -3'
miRNA:   3'- -GACGa-GCCg--UUgCCGCGGCUCGCGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.