miRNA display CGI


Results 1 - 20 of 600 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21410 5' -62 NC_004812.1 + 122815 0.65 0.666913
Target:  5'- gCUGUgggCGGCGcaGCGGgcgaugucgucggcCGCCGAGC-CCGu -3'
miRNA:   3'- -GACGa--GCCGU--UGCC--------------GCGGCUCGcGGU- -5'
21410 5' -62 NC_004812.1 + 96622 0.66 0.620595
Target:  5'- gUGCUgGaGCAccACGGCcgccacgaGCCG-GCGCCGc -3'
miRNA:   3'- gACGAgC-CGU--UGCCG--------CGGCuCGCGGU- -5'
21410 5' -62 NC_004812.1 + 123822 0.66 0.63046
Target:  5'- gUGCcgCGG--GCGGgGcCCGGGCGCCc -3'
miRNA:   3'- gACGa-GCCguUGCCgC-GGCUCGCGGu -5'
21410 5' -62 NC_004812.1 + 81696 0.66 0.620595
Target:  5'- -aGCUgGGCcACGGgGCgGAGCuGCUc -3'
miRNA:   3'- gaCGAgCCGuUGCCgCGgCUCG-CGGu -5'
21410 5' -62 NC_004812.1 + 79861 0.66 0.63046
Target:  5'- gUGUaCGaCAGCGGcCGCCGGGC-CCAg -3'
miRNA:   3'- gACGaGCcGUUGCC-GCGGCUCGcGGU- -5'
21410 5' -62 NC_004812.1 + 23039 0.66 0.620595
Target:  5'- -cGC-CGGCAggACGcCGCCGAGCucgacGCCGc -3'
miRNA:   3'- gaCGaGCCGU--UGCcGCGGCUCG-----CGGU- -5'
21410 5' -62 NC_004812.1 + 98528 0.66 0.63046
Target:  5'- -gGCccCGGCGACGaGcCGUCGcagGGCGCCGa -3'
miRNA:   3'- gaCGa-GCCGUUGC-C-GCGGC---UCGCGGU- -5'
21410 5' -62 NC_004812.1 + 55775 0.66 0.620595
Target:  5'- -cGCccucccCGGCGucGCGGCGCCcgcccccgaGAcGCGCCAg -3'
miRNA:   3'- gaCGa-----GCCGU--UGCCGCGG---------CU-CGCGGU- -5'
21410 5' -62 NC_004812.1 + 56404 0.66 0.607783
Target:  5'- cCUGCUgGGUGacgugauugcagauGCGGUccGCCaGGCGCCGg -3'
miRNA:   3'- -GACGAgCCGU--------------UGCCG--CGGcUCGCGGU- -5'
21410 5' -62 NC_004812.1 + 117273 0.66 0.63046
Target:  5'- -cGCUCcggcgggcgggGGCGGCGGCcuccgguacgGCCGGG-GCCGa -3'
miRNA:   3'- gaCGAG-----------CCGUUGCCG----------CGGCUCgCGGU- -5'
21410 5' -62 NC_004812.1 + 28577 0.66 0.63046
Target:  5'- -gGC-CGGCAGCuGGCGgacgaCGuGCGCCu -3'
miRNA:   3'- gaCGaGCCGUUG-CCGCg----GCuCGCGGu -5'
21410 5' -62 NC_004812.1 + 99481 0.66 0.620595
Target:  5'- -cGCggCGGCGuaccUGGCGgaCUGGGCGCCGu -3'
miRNA:   3'- gaCGa-GCCGUu---GCCGC--GGCUCGCGGU- -5'
21410 5' -62 NC_004812.1 + 42025 0.66 0.610738
Target:  5'- -gGCgggGGCGcGCGGCGCCaAGCGCaCGa -3'
miRNA:   3'- gaCGag-CCGU-UGCCGCGGcUCGCG-GU- -5'
21410 5' -62 NC_004812.1 + 153992 0.66 0.620595
Target:  5'- -cGcCUgGGCcGCGGCGCCaacguGCGCUAc -3'
miRNA:   3'- gaC-GAgCCGuUGCCGCGGcu---CGCGGU- -5'
21410 5' -62 NC_004812.1 + 130740 0.66 0.610738
Target:  5'- -gGCgUCGGCcucGCGGcCGUCGGggcGCGCCGa -3'
miRNA:   3'- gaCG-AGCCGu--UGCC-GCGGCU---CGCGGU- -5'
21410 5' -62 NC_004812.1 + 82219 0.66 0.63046
Target:  5'- -gGCcCGGCcc--GCGCCGAaGCGCCGu -3'
miRNA:   3'- gaCGaGCCGuugcCGCGGCU-CGCGGU- -5'
21410 5' -62 NC_004812.1 + 15092 0.66 0.610738
Target:  5'- -cGC-CGGCu-CGaGC-CCGAGCGCCu -3'
miRNA:   3'- gaCGaGCCGuuGC-CGcGGCUCGCGGu -5'
21410 5' -62 NC_004812.1 + 78471 0.66 0.63046
Target:  5'- aUGC-CGGCcuCGuGCGCCGcgaGGCGCg- -3'
miRNA:   3'- gACGaGCCGuuGC-CGCGGC---UCGCGgu -5'
21410 5' -62 NC_004812.1 + 145344 0.66 0.610738
Target:  5'- gUGCUCGG-GGCGGcCGUgGGGCugGCCGu -3'
miRNA:   3'- gACGAGCCgUUGCC-GCGgCUCG--CGGU- -5'
21410 5' -62 NC_004812.1 + 76600 0.66 0.620595
Target:  5'- gCUGCccgCGGCGAUGGCcucggacacgGCCuGGGCGaCCc -3'
miRNA:   3'- -GACGa--GCCGUUGCCG----------CGG-CUCGC-GGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.