miRNA display CGI


Results 1 - 20 of 600 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21410 5' -62 NC_004812.1 + 41 0.7 0.415617
Target:  5'- -cGCgCGGCGggccgcgggcGCGGCGgCGcGGCGCCAc -3'
miRNA:   3'- gaCGaGCCGU----------UGCCGCgGC-UCGCGGU- -5'
21410 5' -62 NC_004812.1 + 702 0.74 0.229256
Target:  5'- cCUcCUCGGC-GCGGCaGcCCGGGCGCCGg -3'
miRNA:   3'- -GAcGAGCCGuUGCCG-C-GGCUCGCGGU- -5'
21410 5' -62 NC_004812.1 + 708 0.71 0.34426
Target:  5'- -aGCuccgUCGGCGuCGGCGCCG-GCGCg- -3'
miRNA:   3'- gaCG----AGCCGUuGCCGCGGCuCGCGgu -5'
21410 5' -62 NC_004812.1 + 1208 0.74 0.240237
Target:  5'- -aGCUCGGCcgggGGCGGCGCCGcgGGgGCUc -3'
miRNA:   3'- gaCGAGCCG----UUGCCGCGGC--UCgCGGu -5'
21410 5' -62 NC_004812.1 + 1482 0.75 0.198838
Target:  5'- --cCUCGGCgGGCGGCgGCgGAGCGCCGg -3'
miRNA:   3'- gacGAGCCG-UUGCCG-CGgCUCGCGGU- -5'
21410 5' -62 NC_004812.1 + 1659 0.67 0.570551
Target:  5'- -cGCUCccccguuGGCcGCGGCGCCGcGGC-CCGc -3'
miRNA:   3'- gaCGAG-------CCGuUGCCGCGGC-UCGcGGU- -5'
21410 5' -62 NC_004812.1 + 1945 0.71 0.374861
Target:  5'- aCUGUUUauuGCcgcGCGcGCGCCGGGCGCCGg -3'
miRNA:   3'- -GACGAGc--CGu--UGC-CGCGGCUCGCGGU- -5'
21410 5' -62 NC_004812.1 + 2015 0.68 0.532944
Target:  5'- -cGCUCGG----GGCGCCGA-CGCCGg -3'
miRNA:   3'- gaCGAGCCguugCCGCGGCUcGCGGU- -5'
21410 5' -62 NC_004812.1 + 2365 0.73 0.275822
Target:  5'- -gGCcCGGCGcgcGCGGCGUCGcgguccAGCGCCAg -3'
miRNA:   3'- gaCGaGCCGU---UGCCGCGGC------UCGCGGU- -5'
21410 5' -62 NC_004812.1 + 2509 0.71 0.374861
Target:  5'- -gGCgagUCGGCGgcGCGGcCGUCGAGCGCgGg -3'
miRNA:   3'- gaCG---AGCCGU--UGCC-GCGGCUCGCGgU- -5'
21410 5' -62 NC_004812.1 + 2885 0.76 0.163795
Target:  5'- -gGC-CGGCGGCGGCGgCGAGCagGCCGa -3'
miRNA:   3'- gaCGaGCCGUUGCCGCgGCUCG--CGGU- -5'
21410 5' -62 NC_004812.1 + 3123 0.71 0.343518
Target:  5'- -aGCUCcucgccgGGCAGCGGCGCguaGAGCaCCAg -3'
miRNA:   3'- gaCGAG-------CCGUUGCCGCGg--CUCGcGGU- -5'
21410 5' -62 NC_004812.1 + 3258 0.67 0.561806
Target:  5'- -gGCUCGggcgggccGCAGCGcGCGgCGAGCgagGCCAg -3'
miRNA:   3'- gaCGAGC--------CGUUGC-CGCgGCUCG---CGGU- -5'
21410 5' -62 NC_004812.1 + 3357 0.78 0.124692
Target:  5'- -aGCUCGGCGACGacGCGCgGGGCGCa- -3'
miRNA:   3'- gaCGAGCCGUUGC--CGCGgCUCGCGgu -5'
21410 5' -62 NC_004812.1 + 3386 0.71 0.351739
Target:  5'- -gGcCUCgagGGCGGCGGCGgaGGGCGCCGg -3'
miRNA:   3'- gaC-GAG---CCGUUGCCGCggCUCGCGGU- -5'
21410 5' -62 NC_004812.1 + 3426 0.68 0.495335
Target:  5'- -gGCcccggCGGCAcGCGGCGCC-AGcCGCCGc -3'
miRNA:   3'- gaCGa----GCCGU-UGCCGCGGcUC-GCGGU- -5'
21410 5' -62 NC_004812.1 + 3534 0.72 0.31829
Target:  5'- -gGCggGGCcGCGGCGCCGGgccggcucuucuugcGCGCCGg -3'
miRNA:   3'- gaCGagCCGuUGCCGCGGCU---------------CGCGGU- -5'
21410 5' -62 NC_004812.1 + 3577 0.72 0.322514
Target:  5'- -gGCaggCGGCGGCGGCGgCGGgcgggcGCGCCGg -3'
miRNA:   3'- gaCGa--GCCGUUGCCGCgGCU------CGCGGU- -5'
21410 5' -62 NC_004812.1 + 3627 0.69 0.450109
Target:  5'- uUGCgcgcCGGCGggcgcGCGGCGCCGcccGCGUCu -3'
miRNA:   3'- gACGa---GCCGU-----UGCCGCGGCu--CGCGGu -5'
21410 5' -62 NC_004812.1 + 3702 0.73 0.257527
Target:  5'- -aGCaggucggCGGCGGCGGCGCCggcgGAGCGCa- -3'
miRNA:   3'- gaCGa------GCCGUUGCCGCGG----CUCGCGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.