miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21411 3' -53.8 NC_004812.1 + 113186 1.11 0.004449
Target:  5'- cCGGCGAGAUAAUGUCCGCGCUCGUGGu -3'
miRNA:   3'- -GCCGCUCUAUUACAGGCGCGAGCACC- -5'
21411 3' -53.8 NC_004812.1 + 83197 0.77 0.494408
Target:  5'- gCGGCGGGAggcgcgGcgG-CCGCGCUCGgGGg -3'
miRNA:   3'- -GCCGCUCUa-----UuaCaGGCGCGAGCaCC- -5'
21411 3' -53.8 NC_004812.1 + 22777 0.77 0.513738
Target:  5'- aGGUGGGGgcguuugucGUGUCCGCGCucugucUCGUGGg -3'
miRNA:   3'- gCCGCUCUau-------UACAGGCGCG------AGCACC- -5'
21411 3' -53.8 NC_004812.1 + 102208 0.76 0.553262
Target:  5'- gCGGCGucuGGAggacAUGUCCGgGCUCGUcGGg -3'
miRNA:   3'- -GCCGC---UCUau--UACAGGCgCGAGCA-CC- -5'
21411 3' -53.8 NC_004812.1 + 72681 0.76 0.563292
Target:  5'- cCGGCGAGAac--GUCCGCGC-CGgGGg -3'
miRNA:   3'- -GCCGCUCUauuaCAGGCGCGaGCaCC- -5'
21411 3' -53.8 NC_004812.1 + 116300 0.75 0.603828
Target:  5'- uGGCGGGGaugugcUGggGUCCGUGCUCGagcaUGGg -3'
miRNA:   3'- gCCGCUCU------AUuaCAGGCGCGAGC----ACC- -5'
21411 3' -53.8 NC_004812.1 + 37274 0.74 0.67425
Target:  5'- gGGCGGGGUGcagcgggugggccGUGUCCGuCGCcggaucCGUGGg -3'
miRNA:   3'- gCCGCUCUAU-------------UACAGGC-GCGa-----GCACC- -5'
21411 3' -53.8 NC_004812.1 + 98614 0.73 0.725393
Target:  5'- gGGCGGGGcgucGGUGgccagcgCCGUGUUCGUGGc -3'
miRNA:   3'- gCCGCUCUa---UUACa------GGCGCGAGCACC- -5'
21411 3' -53.8 NC_004812.1 + 111722 0.73 0.735215
Target:  5'- gGGCGAGcucgcguucgGGUGcgacgCCGCGCUCGUGc -3'
miRNA:   3'- gCCGCUCua--------UUACa----GGCGCGAGCACc -5'
21411 3' -53.8 NC_004812.1 + 90657 0.72 0.754581
Target:  5'- uGGC-AGAgcacGUUCGUGCUCGUGGu -3'
miRNA:   3'- gCCGcUCUauuaCAGGCGCGAGCACC- -5'
21411 3' -53.8 NC_004812.1 + 42597 0.71 0.791947
Target:  5'- aCGGCGAGAccGUG-CUGCGCaUCGUa- -3'
miRNA:   3'- -GCCGCUCUauUACaGGCGCG-AGCAcc -5'
21411 3' -53.8 NC_004812.1 + 108550 0.71 0.818495
Target:  5'- cCGGCGAGucg----CUGCGCUCGcUGGu -3'
miRNA:   3'- -GCCGCUCuauuacaGGCGCGAGC-ACC- -5'
21411 3' -53.8 NC_004812.1 + 92248 0.71 0.827017
Target:  5'- uGGCGAGGUAGUcccgGUCCG-GCUCcaGGc -3'
miRNA:   3'- gCCGCUCUAUUA----CAGGCgCGAGcaCC- -5'
21411 3' -53.8 NC_004812.1 + 109628 0.7 0.851492
Target:  5'- cCGGCGGGccAUGAcaaccgcccGUCCGCGCUgcugcggaucuaCGUGGa -3'
miRNA:   3'- -GCCGCUC--UAUUa--------CAGGCGCGA------------GCACC- -5'
21411 3' -53.8 NC_004812.1 + 22730 0.7 0.866829
Target:  5'- gGGCGAcGAgcccGUCuCGCGCgcggCGUGGu -3'
miRNA:   3'- gCCGCU-CUauuaCAG-GCGCGa---GCACC- -5'
21411 3' -53.8 NC_004812.1 + 124241 0.69 0.881324
Target:  5'- gCGGCGGGGggccggGUCgaggGCGgUCGUGGg -3'
miRNA:   3'- -GCCGCUCUauua--CAGg---CGCgAGCACC- -5'
21411 3' -53.8 NC_004812.1 + 155142 0.69 0.881324
Target:  5'- gCGGCGGGGggccggGUCgaggGCGgUCGUGGg -3'
miRNA:   3'- -GCCGCUCUauua--CAGg---CGCgAGCACC- -5'
21411 3' -53.8 NC_004812.1 + 156009 0.69 0.888242
Target:  5'- gCGGCG-GAUcggGUCCGCGCUaccGGa -3'
miRNA:   3'- -GCCGCuCUAuuaCAGGCGCGAgcaCC- -5'
21411 3' -53.8 NC_004812.1 + 54761 0.69 0.888242
Target:  5'- gGGCGguGGAcAcgG-CgGCGCUCGUGGc -3'
miRNA:   3'- gCCGC--UCUaUuaCaGgCGCGAGCACC- -5'
21411 3' -53.8 NC_004812.1 + 125108 0.69 0.888242
Target:  5'- gCGGCG-GAUcggGUCCGCGCUaccGGa -3'
miRNA:   3'- -GCCGCuCUAuuaCAGGCGCGAgcaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.