miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21411 3' -53.8 NC_004812.1 + 7719 0.67 0.960589
Target:  5'- gCGGCGGGG--GUcUCCGCGC-CG-GGc -3'
miRNA:   3'- -GCCGCUCUauUAcAGGCGCGaGCaCC- -5'
21411 3' -53.8 NC_004812.1 + 142422 0.68 0.919388
Target:  5'- gCGGCGAcgcaguUGUCCGCGCgUCGg-- -3'
miRNA:   3'- -GCCGCUcuauu-ACAGGCGCG-AGCacc -5'
21411 3' -53.8 NC_004812.1 + 28893 0.68 0.92491
Target:  5'- uGGCccccGAGcug--GUCCGCGC-CGUGGc -3'
miRNA:   3'- gCCG----CUCuauuaCAGGCGCGaGCACC- -5'
21411 3' -53.8 NC_004812.1 + 44584 0.68 0.92491
Target:  5'- uCGGCGuaggcccgcgacAGGUGGUGcucguggcCCGCGUccUCGUGGg -3'
miRNA:   3'- -GCCGC------------UCUAUUACa-------GGCGCG--AGCACC- -5'
21411 3' -53.8 NC_004812.1 + 74372 0.68 0.930194
Target:  5'- gCGGCGGGGUcccGcCCGCGCcCGUuuGGg -3'
miRNA:   3'- -GCCGCUCUAuuaCaGGCGCGaGCA--CC- -5'
21411 3' -53.8 NC_004812.1 + 34367 0.68 0.940046
Target:  5'- cCGGCGGGGUuuUG-CCGCGC-CGc-- -3'
miRNA:   3'- -GCCGCUCUAuuACaGGCGCGaGCacc -5'
21411 3' -53.8 NC_004812.1 + 101400 0.67 0.944617
Target:  5'- aCGGCGuGGUAGggggucGUCCGCaGCUgGcGGu -3'
miRNA:   3'- -GCCGCuCUAUUa-----CAGGCG-CGAgCaCC- -5'
21411 3' -53.8 NC_004812.1 + 20900 0.67 0.953059
Target:  5'- aCGGuCGGGAUGAcGcCCGuCGCguaGUGGu -3'
miRNA:   3'- -GCC-GCUCUAUUaCaGGC-GCGag-CACC- -5'
21411 3' -53.8 NC_004812.1 + 97199 0.67 0.953059
Target:  5'- uGGCGGGGcucauccuggcGGUGcCaCGCGCUgCGUGGg -3'
miRNA:   3'- gCCGCUCUa----------UUACaG-GCGCGA-GCACC- -5'
21411 3' -53.8 NC_004812.1 + 79435 0.68 0.913627
Target:  5'- gGGCGGGGUuuggGGUGgcgccuUCCGCGCggCGgcgGGg -3'
miRNA:   3'- gCCGCUCUA----UUAC------AGGCGCGa-GCa--CC- -5'
21411 3' -53.8 NC_004812.1 + 97321 0.69 0.901399
Target:  5'- gCGGCGGGcgGGUG-CCGCGCgcccgCGa-- -3'
miRNA:   3'- -GCCGCUCuaUUACaGGCGCGa----GCacc -5'
21411 3' -53.8 NC_004812.1 + 125108 0.69 0.888242
Target:  5'- gCGGCG-GAUcggGUCCGCGCUaccGGa -3'
miRNA:   3'- -GCCGCuCUAuuaCAGGCGCGAgcaCC- -5'
21411 3' -53.8 NC_004812.1 + 102208 0.76 0.553262
Target:  5'- gCGGCGucuGGAggacAUGUCCGgGCUCGUcGGg -3'
miRNA:   3'- -GCCGC---UCUau--UACAGGCgCGAGCA-CC- -5'
21411 3' -53.8 NC_004812.1 + 72681 0.76 0.563292
Target:  5'- cCGGCGAGAac--GUCCGCGC-CGgGGg -3'
miRNA:   3'- -GCCGCUCUauuaCAGGCGCGaGCaCC- -5'
21411 3' -53.8 NC_004812.1 + 116300 0.75 0.603828
Target:  5'- uGGCGGGGaugugcUGggGUCCGUGCUCGagcaUGGg -3'
miRNA:   3'- gCCGCUCU------AUuaCAGGCGCGAGC----ACC- -5'
21411 3' -53.8 NC_004812.1 + 37274 0.74 0.67425
Target:  5'- gGGCGGGGUGcagcgggugggccGUGUCCGuCGCcggaucCGUGGg -3'
miRNA:   3'- gCCGCUCUAU-------------UACAGGC-GCGa-----GCACC- -5'
21411 3' -53.8 NC_004812.1 + 42597 0.71 0.791947
Target:  5'- aCGGCGAGAccGUG-CUGCGCaUCGUa- -3'
miRNA:   3'- -GCCGCUCUauUACaGGCGCG-AGCAcc -5'
21411 3' -53.8 NC_004812.1 + 108550 0.71 0.818495
Target:  5'- cCGGCGAGucg----CUGCGCUCGcUGGu -3'
miRNA:   3'- -GCCGCUCuauuacaGGCGCGAGC-ACC- -5'
21411 3' -53.8 NC_004812.1 + 22730 0.7 0.866829
Target:  5'- gGGCGAcGAgcccGUCuCGCGCgcggCGUGGu -3'
miRNA:   3'- gCCGCU-CUauuaCAG-GCGCGa---GCACC- -5'
21411 3' -53.8 NC_004812.1 + 124241 0.69 0.881324
Target:  5'- gCGGCGGGGggccggGUCgaggGCGgUCGUGGg -3'
miRNA:   3'- -GCCGCUCUauua--CAGg---CGCgAGCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.