Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21411 | 3' | -53.8 | NC_004812.1 | + | 818 | 0.66 | 0.975663 |
Target: 5'- cCGGcCGGGAagcGGUGUCCGaCGCcCGgagGGc -3' miRNA: 3'- -GCC-GCUCUa--UUACAGGC-GCGaGCa--CC- -5' |
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21411 | 3' | -53.8 | NC_004812.1 | + | 7719 | 0.67 | 0.960589 |
Target: 5'- gCGGCGGGG--GUcUCCGCGC-CG-GGc -3' miRNA: 3'- -GCCGCUCUauUAcAGGCGCGaGCaCC- -5' |
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21411 | 3' | -53.8 | NC_004812.1 | + | 16212 | 0.69 | 0.894276 |
Target: 5'- aCGGUgGGGGUGGUGUCCguggcgaGCGCggCGUuGGg -3' miRNA: 3'- -GCCG-CUCUAUUACAGG-------CGCGa-GCA-CC- -5' |
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21411 | 3' | -53.8 | NC_004812.1 | + | 20900 | 0.67 | 0.953059 |
Target: 5'- aCGGuCGGGAUGAcGcCCGuCGCguaGUGGu -3' miRNA: 3'- -GCC-GCUCUAUUaCaGGC-GCGag-CACC- -5' |
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21411 | 3' | -53.8 | NC_004812.1 | + | 22730 | 0.7 | 0.866829 |
Target: 5'- gGGCGAcGAgcccGUCuCGCGCgcggCGUGGu -3' miRNA: 3'- gCCGCU-CUauuaCAG-GCGCGa---GCACC- -5' |
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21411 | 3' | -53.8 | NC_004812.1 | + | 22777 | 0.77 | 0.513738 |
Target: 5'- aGGUGGGGgcguuugucGUGUCCGCGCucugucUCGUGGg -3' miRNA: 3'- gCCGCUCUau-------UACAGGCGCG------AGCACC- -5' |
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21411 | 3' | -53.8 | NC_004812.1 | + | 23629 | 0.66 | 0.970248 |
Target: 5'- gGGCGcccAGAcgGGcGUCCGCGUgacccucgcccUCGUGGc -3' miRNA: 3'- gCCGC---UCUa-UUaCAGGCGCG-----------AGCACC- -5' |
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21411 | 3' | -53.8 | NC_004812.1 | + | 28893 | 0.68 | 0.92491 |
Target: 5'- uGGCccccGAGcug--GUCCGCGC-CGUGGc -3' miRNA: 3'- gCCG----CUCuauuaCAGGCGCGaGCACC- -5' |
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21411 | 3' | -53.8 | NC_004812.1 | + | 34367 | 0.68 | 0.940046 |
Target: 5'- cCGGCGGGGUuuUG-CCGCGC-CGc-- -3' miRNA: 3'- -GCCGCUCUAuuACaGGCGCGaGCacc -5' |
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21411 | 3' | -53.8 | NC_004812.1 | + | 37274 | 0.74 | 0.67425 |
Target: 5'- gGGCGGGGUGcagcgggugggccGUGUCCGuCGCcggaucCGUGGg -3' miRNA: 3'- gCCGCUCUAU-------------UACAGGC-GCGa-----GCACC- -5' |
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21411 | 3' | -53.8 | NC_004812.1 | + | 38620 | 0.67 | 0.960589 |
Target: 5'- gCGGCGGGG--GUcUCCGCGC-CG-GGc -3' miRNA: 3'- -GCCGCUCUauUAcAGGCGCGaGCaCC- -5' |
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21411 | 3' | -53.8 | NC_004812.1 | + | 42597 | 0.71 | 0.791947 |
Target: 5'- aCGGCGAGAccGUG-CUGCGCaUCGUa- -3' miRNA: 3'- -GCCGCUCUauUACaGGCGCG-AGCAcc -5' |
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21411 | 3' | -53.8 | NC_004812.1 | + | 44584 | 0.68 | 0.92491 |
Target: 5'- uCGGCGuaggcccgcgacAGGUGGUGcucguggcCCGCGUccUCGUGGg -3' miRNA: 3'- -GCCGC------------UCUAUUACa-------GGCGCG--AGCACC- -5' |
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21411 | 3' | -53.8 | NC_004812.1 | + | 48189 | 0.67 | 0.953059 |
Target: 5'- uCGGCGucGAgg--GUCCGCGCcaCGUGc -3' miRNA: 3'- -GCCGCu-CUauuaCAGGCGCGa-GCACc -5' |
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21411 | 3' | -53.8 | NC_004812.1 | + | 49167 | 0.66 | 0.973054 |
Target: 5'- gCGGCGAGuccgcgAcgGccgCCGCGCggccgGUGGg -3' miRNA: 3'- -GCCGCUCua----UuaCa--GGCGCGag---CACC- -5' |
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21411 | 3' | -53.8 | NC_004812.1 | + | 50623 | 0.66 | 0.975663 |
Target: 5'- aGGCGAGcgAGaaGUUCGgGCU-GUGGg -3' miRNA: 3'- gCCGCUCuaUUa-CAGGCgCGAgCACC- -5' |
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21411 | 3' | -53.8 | NC_004812.1 | + | 54161 | 0.68 | 0.940046 |
Target: 5'- gCGGCGGGAcac-GUaCCGCGCccgCGUGu -3' miRNA: 3'- -GCCGCUCUauuaCA-GGCGCGa--GCACc -5' |
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21411 | 3' | -53.8 | NC_004812.1 | + | 54761 | 0.69 | 0.888242 |
Target: 5'- gGGCGguGGAcAcgG-CgGCGCUCGUGGc -3' miRNA: 3'- gCCGC--UCUaUuaCaGgCGCGAGCACC- -5' |
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21411 | 3' | -53.8 | NC_004812.1 | + | 61217 | 0.66 | 0.970248 |
Target: 5'- gGGCGGGGgggcugggguGUGUCCG-GCg-GUGGa -3' miRNA: 3'- gCCGCUCUau--------UACAGGCgCGagCACC- -5' |
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21411 | 3' | -53.8 | NC_004812.1 | + | 67295 | 0.66 | 0.975663 |
Target: 5'- gCGGCGGGGgcggGagCGgGCUCG-GGg -3' miRNA: 3'- -GCCGCUCUauuaCagGCgCGAGCaCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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