miRNA display CGI


Results 1 - 20 of 528 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21411 5' -60 NC_004812.1 + 66340 0.66 0.724487
Target:  5'- cGCUGCAgGCggGGCAGCAGCc-GCCGa -3'
miRNA:   3'- cUGGUGUgCG--UCGUCGUCGacCGGCc -5'
21411 5' -60 NC_004812.1 + 137016 0.66 0.724487
Target:  5'- -uUCGC-CGCGGCuGCaAGCcccccucggaggUGGCCGGg -3'
miRNA:   3'- cuGGUGuGCGUCGuCG-UCG------------ACCGGCC- -5'
21411 5' -60 NC_004812.1 + 117665 0.66 0.714765
Target:  5'- nGCCGgGCGCcgggGGguGcCGGCggaGGCCGGc -3'
miRNA:   3'- cUGGUgUGCG----UCguC-GUCGa--CCGGCC- -5'
21411 5' -60 NC_004812.1 + 58249 0.66 0.704976
Target:  5'- aGACCcaGCACGaccauggGGCGcGCGGCcaucacgGGCCGGa -3'
miRNA:   3'- -CUGG--UGUGCg------UCGU-CGUCGa------CCGGCC- -5'
21411 5' -60 NC_004812.1 + 35833 0.66 0.713789
Target:  5'- cGCCGucgcgguacuUGCGCAGCAGCGcggggucGCUGGCgcaggCGGg -3'
miRNA:   3'- cUGGU----------GUGCGUCGUCGU-------CGACCG-----GCC- -5'
21411 5' -60 NC_004812.1 + 155575 0.66 0.721578
Target:  5'- gGGgCGCGCGCgGGCGGCcgggcccucgcgggGGCgcggccccGGCCGGg -3'
miRNA:   3'- -CUgGUGUGCG-UCGUCG--------------UCGa-------CCGGCC- -5'
21411 5' -60 NC_004812.1 + 153877 0.66 0.714765
Target:  5'- cGCCGCGCGCGaccugcGCcGCGccguGCUGGCCu- -3'
miRNA:   3'- cUGGUGUGCGU------CGuCGU----CGACCGGcc -5'
21411 5' -60 NC_004812.1 + 42238 0.66 0.703993
Target:  5'- gGACCGCGCGCGucGCguguucgGGgAGCaGGCCuGGa -3'
miRNA:   3'- -CUGGUGUGCGU--CG-------UCgUCGaCCGG-CC- -5'
21411 5' -60 NC_004812.1 + 68181 0.66 0.714765
Target:  5'- cGGCCGCGgGCGGgGGC-GC--GCCGGa -3'
miRNA:   3'- -CUGGUGUgCGUCgUCGuCGacCGGCC- -5'
21411 5' -60 NC_004812.1 + 156236 0.66 0.753159
Target:  5'- cGCCGCgggAUGCGcCGGCGGC-GGCCGa -3'
miRNA:   3'- cUGGUG---UGCGUcGUCGUCGaCCGGCc -5'
21411 5' -60 NC_004812.1 + 129870 0.66 0.724487
Target:  5'- uGGCgACG-GCGGCGGCGGCgUGcGCCaGGc -3'
miRNA:   3'- -CUGgUGUgCGUCGUCGUCG-AC-CGG-CC- -5'
21411 5' -60 NC_004812.1 + 51237 0.66 0.704976
Target:  5'- aGACCAU-CGCGGC----GCUGGUCGGa -3'
miRNA:   3'- -CUGGUGuGCGUCGucguCGACCGGCC- -5'
21411 5' -60 NC_004812.1 + 30225 0.66 0.724487
Target:  5'- -uCCAuCGCcCAGCAGUAGauCUGGCCGc -3'
miRNA:   3'- cuGGU-GUGcGUCGUCGUC--GACCGGCc -5'
21411 5' -60 NC_004812.1 + 19151 0.66 0.704976
Target:  5'- cGCCGCgggggGCGCGGCGGCGGC--GCCc- -3'
miRNA:   3'- cUGGUG-----UGCGUCGUCGUCGacCGGcc -5'
21411 5' -60 NC_004812.1 + 126624 0.66 0.714765
Target:  5'- cGACCGCcgGCGaGGCAGaAGCcGGCCGc -3'
miRNA:   3'- -CUGGUG--UGCgUCGUCgUCGaCCGGCc -5'
21411 5' -60 NC_004812.1 + 127970 0.66 0.702027
Target:  5'- cGCCGCggcggaaguccgggGCGcCGGCGGCGGC-GGCCu- -3'
miRNA:   3'- cUGGUG--------------UGC-GUCGUCGUCGaCCGGcc -5'
21411 5' -60 NC_004812.1 + 140862 0.66 0.704976
Target:  5'- uGCCGCaggcgcgcaagGCGCGGgGGUGGgUGGCgGGa -3'
miRNA:   3'- cUGGUG-----------UGCGUCgUCGUCgACCGgCC- -5'
21411 5' -60 NC_004812.1 + 32431 0.66 0.723518
Target:  5'- cGGCCGCGCcCAGCcgccccacguaccGGCAGaaGuGCCGGc -3'
miRNA:   3'- -CUGGUGUGcGUCG-------------UCGUCgaC-CGGCC- -5'
21411 5' -60 NC_004812.1 + 97119 0.66 0.704976
Target:  5'- gGGCCGCGcCGCcGCGGCGGC-GcGCCu- -3'
miRNA:   3'- -CUGGUGU-GCGuCGUCGUCGaC-CGGcc -5'
21411 5' -60 NC_004812.1 + 33465 0.66 0.714765
Target:  5'- gGACgGCGCccuGCGGCGGaCGGCcgaccucuuccUGGCCGa -3'
miRNA:   3'- -CUGgUGUG---CGUCGUC-GUCG-----------ACCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.