miRNA display CGI


Results 1 - 20 of 528 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21411 5' -60 NC_004812.1 + 39272 0.76 0.238476
Target:  5'- cGCUGCAUggGCAGCAGCAGCgccaggGGCgGGg -3'
miRNA:   3'- cUGGUGUG--CGUCGUCGUCGa-----CCGgCC- -5'
21411 5' -60 NC_004812.1 + 151698 0.77 0.198636
Target:  5'- gGGCCGCA-GCgAGCGGCGGCgcgcgcgcgccgccgUGGCCGGg -3'
miRNA:   3'- -CUGGUGUgCG-UCGUCGUCG---------------ACCGGCC- -5'
21411 5' -60 NC_004812.1 + 16218 0.77 0.206511
Target:  5'- gGGCCGCGCGCcggaGGCGG-AGCcGGCCGGc -3'
miRNA:   3'- -CUGGUGUGCG----UCGUCgUCGaCCGGCC- -5'
21411 5' -60 NC_004812.1 + 155100 0.76 0.211568
Target:  5'- uGCCcuCGCGCGGCGGC-GCgGGCCGGc -3'
miRNA:   3'- cUGGu-GUGCGUCGUCGuCGaCCGGCC- -5'
21411 5' -60 NC_004812.1 + 73554 0.76 0.222004
Target:  5'- cGACCGCGgGCAGCAcGCGGaccuccgGGCUGGg -3'
miRNA:   3'- -CUGGUGUgCGUCGU-CGUCga-----CCGGCC- -5'
21411 5' -60 NC_004812.1 + 142164 0.76 0.222004
Target:  5'- cGGCCACACG-GGCgccaucguuGGCGcGCUGGCCGGc -3'
miRNA:   3'- -CUGGUGUGCgUCG---------UCGU-CGACCGGCC- -5'
21411 5' -60 NC_004812.1 + 80977 0.76 0.227384
Target:  5'- gGACCGC-CGCGGC-GC-GCUGGUCGGu -3'
miRNA:   3'- -CUGGUGuGCGUCGuCGuCGACCGGCC- -5'
21411 5' -60 NC_004812.1 + 117372 0.76 0.227384
Target:  5'- cGGCCGCgcccggcaGCGCGGCGGCGGC--GCCGGc -3'
miRNA:   3'- -CUGGUG--------UGCGUCGUCGUCGacCGGCC- -5'
21411 5' -60 NC_004812.1 + 65091 0.76 0.23232
Target:  5'- uGGCCGCGCGCcccgcggAGgAGUGGCUGGCgCGGc -3'
miRNA:   3'- -CUGGUGUGCG-------UCgUCGUCGACCG-GCC- -5'
21411 5' -60 NC_004812.1 + 100634 0.77 0.190091
Target:  5'- gGAUCGCGCGCA-CGGCGGCgcgagccgcgccgGGCCGGg -3'
miRNA:   3'- -CUGGUGUGCGUcGUCGUCGa------------CCGGCC- -5'
21411 5' -60 NC_004812.1 + 71229 0.77 0.182768
Target:  5'- cGGCCGCgaggGCGCGGCggggacGGCGGCggugGGCCGGc -3'
miRNA:   3'- -CUGGUG----UGCGUCG------UCGUCGa---CCGGCC- -5'
21411 5' -60 NC_004812.1 + 138715 0.77 0.178319
Target:  5'- cGACCGCgGCGCGGCGggcccGCGGCgugccGGCCGGu -3'
miRNA:   3'- -CUGGUG-UGCGUCGU-----CGUCGa----CCGGCC- -5'
21411 5' -60 NC_004812.1 + 95586 0.82 0.087464
Target:  5'- cGGCCGCgcccgcgcgcggGCGCGGCAGCAGCaacggcaccgGGCCGGg -3'
miRNA:   3'- -CUGGUG------------UGCGUCGUCGUCGa---------CCGGCC- -5'
21411 5' -60 NC_004812.1 + 68210 0.81 0.099326
Target:  5'- cGGCCGCGCGCGGCcggccggGGguGCgcgggGGCCGGg -3'
miRNA:   3'- -CUGGUGUGCGUCG-------UCguCGa----CCGGCC- -5'
21411 5' -60 NC_004812.1 + 103621 0.79 0.146072
Target:  5'- uGGCCAgCACGCGGCGGUAGCUcuccucgcgGGCgCGGa -3'
miRNA:   3'- -CUGGU-GUGCGUCGUCGUCGA---------CCG-GCC- -5'
21411 5' -60 NC_004812.1 + 40006 0.79 0.146072
Target:  5'- cGGCCGCgacagACGCGGCGGCccgcGGCgGGCCGGu -3'
miRNA:   3'- -CUGGUG-----UGCGUCGUCG----UCGaCCGGCC- -5'
21411 5' -60 NC_004812.1 + 75814 0.79 0.149792
Target:  5'- cGGCCGCGaGCGGCGGCAGC--GCCGGg -3'
miRNA:   3'- -CUGGUGUgCGUCGUCGUCGacCGGCC- -5'
21411 5' -60 NC_004812.1 + 77427 0.78 0.15749
Target:  5'- -cCCGCGCuGCAccagcucccGCAGCAGCUcGGCCGGg -3'
miRNA:   3'- cuGGUGUG-CGU---------CGUCGUCGA-CCGGCC- -5'
21411 5' -60 NC_004812.1 + 54767 0.78 0.173966
Target:  5'- cGGCgCGCGgGCGGCuacgggGGCGGCUGGUCGGg -3'
miRNA:   3'- -CUG-GUGUgCGUCG------UCGUCGACCGGCC- -5'
21411 5' -60 NC_004812.1 + 128725 0.77 0.178319
Target:  5'- gGGCCcgagGCGCGCGGCGGCcgaaGGCgcGGCCGGa -3'
miRNA:   3'- -CUGG----UGUGCGUCGUCG----UCGa-CCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.