miRNA display CGI


Results 1 - 20 of 528 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21411 5' -60 NC_004812.1 + 49 0.7 0.505247
Target:  5'- gGGCCGCggGCGCGGCGGCGcggcgccacgcgcgcGCacucgcgagggacgGGCCGGg -3'
miRNA:   3'- -CUGGUG--UGCGUCGUCGU---------------CGa-------------CCGGCC- -5'
21411 5' -60 NC_004812.1 + 510 0.68 0.625232
Target:  5'- cGGCCGC-CGCGGCcGgGGCgGGCCc- -3'
miRNA:   3'- -CUGGUGuGCGUCGuCgUCGaCCGGcc -5'
21411 5' -60 NC_004812.1 + 1115 0.66 0.714765
Target:  5'- cGACCGCcgGCGaGGCAGaAGCcGGCCGc -3'
miRNA:   3'- -CUGGUG--UGCgUCGUCgUCGaCCGGCc -5'
21411 5' -60 NC_004812.1 + 1180 0.7 0.497677
Target:  5'- gGACgAUGCGCuGCAcuccgguauauGUAGCUcGGCCGGg -3'
miRNA:   3'- -CUGgUGUGCGuCGU-----------CGUCGA-CCGGCC- -5'
21411 5' -60 NC_004812.1 + 1414 0.67 0.675287
Target:  5'- cGGCC-C-CGaCGGCGGCcGCggggaggGGCCGGg -3'
miRNA:   3'- -CUGGuGuGC-GUCGUCGuCGa------CCGGCC- -5'
21411 5' -60 NC_004812.1 + 1484 0.69 0.575292
Target:  5'- -uCgGCGgGCGGCGGCggAGCgccGGCCGGc -3'
miRNA:   3'- cuGgUGUgCGUCGUCG--UCGa--CCGGCC- -5'
21411 5' -60 NC_004812.1 + 2237 0.73 0.359221
Target:  5'- aGCgCACGCGCGGC-GCGGC-GGCgGGg -3'
miRNA:   3'- cUG-GUGUGCGUCGuCGUCGaCCGgCC- -5'
21411 5' -60 NC_004812.1 + 2275 0.74 0.287408
Target:  5'- -uCCGCGCGCAGCacgAGCGGCgcgGcGUCGGg -3'
miRNA:   3'- cuGGUGUGCGUCG---UCGUCGa--C-CGGCC- -5'
21411 5' -60 NC_004812.1 + 2333 0.68 0.625232
Target:  5'- aGAagGCGCGCAGCgcgGGCGGCagGGCguCGGg -3'
miRNA:   3'- -CUggUGUGCGUCG---UCGUCGa-CCG--GCC- -5'
21411 5' -60 NC_004812.1 + 2462 0.66 0.702027
Target:  5'- cGCCGCggcggaaguccgggGCGcCGGCGGCGGC-GGCCu- -3'
miRNA:   3'- cUGGUG--------------UGC-GUCGUCGUCGaCCGGcc -5'
21411 5' -60 NC_004812.1 + 2557 0.7 0.478981
Target:  5'- uACU-CGCGCGGCGGCAGg-GGCaCGGg -3'
miRNA:   3'- cUGGuGUGCGUCGUCGUCgaCCG-GCC- -5'
21411 5' -60 NC_004812.1 + 2601 0.71 0.425105
Target:  5'- cGugCGCGCGCGGUAGCGcacGUUGGCgccgCGGn -3'
miRNA:   3'- -CugGUGUGCGUCGUCGU---CGACCG----GCC- -5'
21411 5' -60 NC_004812.1 + 2635 0.74 0.300814
Target:  5'- -cCCAgGCGCGGCGGCGGCgcguCCGGg -3'
miRNA:   3'- cuGGUgUGCGUCGUCGUCGacc-GGCC- -5'
21411 5' -60 NC_004812.1 + 2812 0.67 0.675287
Target:  5'- uGGCgGCGCGCGaCGGCGgGCccgucGGCCGGc -3'
miRNA:   3'- -CUGgUGUGCGUcGUCGU-CGa----CCGGCC- -5'
21411 5' -60 NC_004812.1 + 2884 0.69 0.535995
Target:  5'- cGGCCgGCG-GCGGCGGCgAGCaGGCCGa -3'
miRNA:   3'- -CUGG-UGUgCGUCGUCG-UCGaCCGGCc -5'
21411 5' -60 NC_004812.1 + 3076 0.69 0.565395
Target:  5'- cGCCGCGCGCGuCGGUccaGGCgGGCgGGg -3'
miRNA:   3'- cUGGUGUGCGUcGUCG---UCGaCCGgCC- -5'
21411 5' -60 NC_004812.1 + 3181 0.7 0.507148
Target:  5'- cGACCugGCGCAuccaGGCGGC-GGCgCGGc -3'
miRNA:   3'- -CUGGugUGCGUcg--UCGUCGaCCG-GCC- -5'
21411 5' -60 NC_004812.1 + 3216 0.72 0.367056
Target:  5'- gGGCCcgagGCGCGCGGCGGgccgaaGGCgcGGCCGGa -3'
miRNA:   3'- -CUGG----UGUGCGUCGUCg-----UCGa-CCGGCC- -5'
21411 5' -60 NC_004812.1 + 3267 0.68 0.605191
Target:  5'- gGGCCGCAgCGC-GCGGCgAGCgaGGCCa- -3'
miRNA:   3'- -CUGGUGU-GCGuCGUCG-UCGa-CCGGcc -5'
21411 5' -60 NC_004812.1 + 3317 0.66 0.753159
Target:  5'- cGCgGCGCGCcaGGCcucggggaagAGCGGgUGGUCGGu -3'
miRNA:   3'- cUGgUGUGCG--UCG----------UCGUCgACCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.