Results 1 - 20 of 277 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21412 | 5' | -62.2 | NC_004812.1 | + | 113087 | 1.08 | 0.001045 |
Target: 5'- aGGGGCGGACCCGGGAGAUCGAGCCAAa -3' miRNA: 3'- -CCCCGCCUGGGCCCUCUAGCUCGGUU- -5' |
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21412 | 5' | -62.2 | NC_004812.1 | + | 38906 | 0.8 | 0.094698 |
Target: 5'- gGGGGCGcucccgcGACCCGGGGGGcgCGGGCCGg -3' miRNA: 3'- -CCCCGC-------CUGGGCCCUCUa-GCUCGGUu -5' |
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21412 | 5' | -62.2 | NC_004812.1 | + | 152999 | 0.8 | 0.094938 |
Target: 5'- cGGGGCGGGCCUGGGucAGGgccUGGGCCAGg -3' miRNA: 3'- -CCCCGCCUGGGCCC--UCUa--GCUCGGUU- -5' |
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21412 | 5' | -62.2 | NC_004812.1 | + | 122098 | 0.8 | 0.094938 |
Target: 5'- cGGGGCGGGCCUGGGucAGGgccUGGGCCAGg -3' miRNA: 3'- -CCCCGCCUGGGCCC--UCUa--GCUCGGUU- -5' |
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21412 | 5' | -62.2 | NC_004812.1 | + | 36028 | 0.78 | 0.128339 |
Target: 5'- gGGGGCGGGCgcggaggCGGGAGGgccgCGGGCCAGa -3' miRNA: 3'- -CCCCGCCUGg------GCCCUCUa---GCUCGGUU- -5' |
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21412 | 5' | -62.2 | NC_004812.1 | + | 5127 | 0.78 | 0.128339 |
Target: 5'- gGGGGCGGGCgcggaggCGGGAGGgccgCGGGCCAGa -3' miRNA: 3'- -CCCCGCCUGg------GCCCUCUa---GCUCGGUU- -5' |
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21412 | 5' | -62.2 | NC_004812.1 | + | 77484 | 0.77 | 0.152556 |
Target: 5'- cGGGGCugGGACCCGGGcccggCGGGCCAc -3' miRNA: 3'- -CCCCG--CCUGGGCCCucua-GCUCGGUu -5' |
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21412 | 5' | -62.2 | NC_004812.1 | + | 38591 | 0.77 | 0.164155 |
Target: 5'- uGGGCGGGCgCGGG-GGUCGcGCCGAg -3' miRNA: 3'- cCCCGCCUGgGCCCuCUAGCuCGGUU- -5' |
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21412 | 5' | -62.2 | NC_004812.1 | + | 7690 | 0.77 | 0.164155 |
Target: 5'- uGGGCGGGCgCGGG-GGUCGcGCCGAg -3' miRNA: 3'- cCCCGCCUGgGCCCuCUAGCuCGGUU- -5' |
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21412 | 5' | -62.2 | NC_004812.1 | + | 39364 | 0.76 | 0.166973 |
Target: 5'- -cGGCGGGCCCGGGuacgccagagguggAGAUCGAGCg-- -3' miRNA: 3'- ccCCGCCUGGGCCC--------------UCUAGCUCGguu -5' |
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21412 | 5' | -62.2 | NC_004812.1 | + | 8463 | 0.76 | 0.166973 |
Target: 5'- -cGGCGGGCCCGGGuacgccagagguggAGAUCGAGCg-- -3' miRNA: 3'- ccCCGCCUGGGCCC--------------UCUAGCUCGguu -5' |
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21412 | 5' | -62.2 | NC_004812.1 | + | 71688 | 0.76 | 0.172321 |
Target: 5'- -cGGCGG-CCCGGGGGGgcgugcugUCGGGCCAGg -3' miRNA: 3'- ccCCGCCuGGGCCCUCU--------AGCUCGGUU- -5' |
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21412 | 5' | -62.2 | NC_004812.1 | + | 95535 | 0.76 | 0.17654 |
Target: 5'- cGGGGCGG-CCCGGGGcGUCGcGCCc- -3' miRNA: 3'- -CCCCGCCuGGGCCCUcUAGCuCGGuu -5' |
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21412 | 5' | -62.2 | NC_004812.1 | + | 5872 | 0.76 | 0.17654 |
Target: 5'- uGGGcGCGGGCCgGGGGGcgCGGGCgCGGg -3' miRNA: 3'- -CCC-CGCCUGGgCCCUCuaGCUCG-GUU- -5' |
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21412 | 5' | -62.2 | NC_004812.1 | + | 36773 | 0.76 | 0.17654 |
Target: 5'- uGGGcGCGGGCCgGGGGGcgCGGGCgCGGg -3' miRNA: 3'- -CCC-CGCCUGGgCCCUCuaGCUCG-GUU- -5' |
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21412 | 5' | -62.2 | NC_004812.1 | + | 5345 | 0.76 | 0.17654 |
Target: 5'- cGGGGgGaGGCCCGGGAGAggcggcagacUCGGGCUc- -3' miRNA: 3'- -CCCCgC-CUGGGCCCUCU----------AGCUCGGuu -5' |
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21412 | 5' | -62.2 | NC_004812.1 | + | 36246 | 0.76 | 0.17654 |
Target: 5'- cGGGGgGaGGCCCGGGAGAggcggcagacUCGGGCUc- -3' miRNA: 3'- -CCCCgC-CUGGGCCCUCU----------AGCUCGGuu -5' |
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21412 | 5' | -62.2 | NC_004812.1 | + | 154729 | 0.76 | 0.189749 |
Target: 5'- cGGGCgGGGCCCGGGcGccCGGGCCAAu -3' miRNA: 3'- cCCCG-CCUGGGCCCuCuaGCUCGGUU- -5' |
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21412 | 5' | -62.2 | NC_004812.1 | + | 123828 | 0.76 | 0.189749 |
Target: 5'- cGGGCgGGGCCCGGGcGccCGGGCCAAu -3' miRNA: 3'- cCCCG-CCUGGGCCCuCuaGCUCGGUU- -5' |
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21412 | 5' | -62.2 | NC_004812.1 | + | 125168 | 0.75 | 0.199031 |
Target: 5'- cGGGGCGGgaggcgggaggGCCCGGGcGcgCGGGCCc- -3' miRNA: 3'- -CCCCGCC-----------UGGGCCCuCuaGCUCGGuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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