miRNA display CGI


Results 1 - 20 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21412 5' -62.2 NC_004812.1 + 121136 0.73 0.265722
Target:  5'- -cGGCGGGCCCGGGGGuccaaggguggcgCGAGuCCAGa -3'
miRNA:   3'- ccCCGCCUGGGCCCUCua-----------GCUC-GGUU- -5'
21412 5' -62.2 NC_004812.1 + 155290 0.75 0.213694
Target:  5'- aGGGGCGGggcgcggcgggGCCCGGG-GGUCGGcGCCc- -3'
miRNA:   3'- -CCCCGCC-----------UGGGCCCuCUAGCU-CGGuu -5'
21412 5' -62.2 NC_004812.1 + 5953 0.74 0.229275
Target:  5'- gGGGGCaGGGCCCGGGgaggccgcgggGGggCGAGUCGc -3'
miRNA:   3'- -CCCCG-CCUGGGCCC-----------UCuaGCUCGGUu -5'
21412 5' -62.2 NC_004812.1 + 128965 0.74 0.229275
Target:  5'- gGGGGuCGGGCCCGGcGGGcgGUCGcGCCGu -3'
miRNA:   3'- -CCCC-GCCUGGGCC-CUC--UAGCuCGGUu -5'
21412 5' -62.2 NC_004812.1 + 18378 0.74 0.229275
Target:  5'- --cGCGGGCCCGcGGAGGggaaaccccUCGAGCCGAu -3'
miRNA:   3'- cccCGCCUGGGC-CCUCU---------AGCUCGGUU- -5'
21412 5' -62.2 NC_004812.1 + 8004 0.74 0.234133
Target:  5'- gGGGGCGcucccgcGACCCcgGGGGGcgCGGGCCGg -3'
miRNA:   3'- -CCCCGC-------CUGGG--CCCUCuaGCUCGGUu -5'
21412 5' -62.2 NC_004812.1 + 27772 0.74 0.234679
Target:  5'- aGGGGCGGGCggcccagcccgCCGGGGGAgagggCgGGGCCGGg -3'
miRNA:   3'- -CCCCGCCUG-----------GGCCCUCUa----G-CUCGGUU- -5'
21412 5' -62.2 NC_004812.1 + 30829 0.73 0.263312
Target:  5'- aGGGCGGcgccaggcgccGCCCGGGGGcgCGcccGGCCAu -3'
miRNA:   3'- cCCCGCC-----------UGGGCCCUCuaGC---UCGGUu -5'
21412 5' -62.2 NC_004812.1 + 122225 0.73 0.263312
Target:  5'- gGGGGCGGGCgCGGGGGGcUCGgcGGCgGGg -3'
miRNA:   3'- -CCCCGCCUGgGCCCUCU-AGC--UCGgUU- -5'
21412 5' -62.2 NC_004812.1 + 72143 0.75 0.213694
Target:  5'- aGGGuGCGGGgCCGGGGGAggCGGGCUu- -3'
miRNA:   3'- -CCC-CGCCUgGGCCCUCUa-GCUCGGuu -5'
21412 5' -62.2 NC_004812.1 + 23822 0.75 0.212688
Target:  5'- cGGGGCGGcgACCCGGGGccggcccGGcccggcgccgcccUCGAGCCGAu -3'
miRNA:   3'- -CCCCGCC--UGGGCCCU-------CU-------------AGCUCGGUU- -5'
21412 5' -62.2 NC_004812.1 + 125168 0.75 0.199031
Target:  5'- cGGGGCGGgaggcgggaggGCCCGGGcGcgCGGGCCc- -3'
miRNA:   3'- -CCCCGCC-----------UGGGCCCuCuaGCUCGGuu -5'
21412 5' -62.2 NC_004812.1 + 5127 0.78 0.128339
Target:  5'- gGGGGCGGGCgcggaggCGGGAGGgccgCGGGCCAGa -3'
miRNA:   3'- -CCCCGCCUGg------GCCCUCUa---GCUCGGUU- -5'
21412 5' -62.2 NC_004812.1 + 77484 0.77 0.152556
Target:  5'- cGGGGCugGGACCCGGGcccggCGGGCCAc -3'
miRNA:   3'- -CCCCG--CCUGGGCCCucua-GCUCGGUu -5'
21412 5' -62.2 NC_004812.1 + 7690 0.77 0.164155
Target:  5'- uGGGCGGGCgCGGG-GGUCGcGCCGAg -3'
miRNA:   3'- cCCCGCCUGgGCCCuCUAGCuCGGUU- -5'
21412 5' -62.2 NC_004812.1 + 8463 0.76 0.166973
Target:  5'- -cGGCGGGCCCGGGuacgccagagguggAGAUCGAGCg-- -3'
miRNA:   3'- ccCCGCCUGGGCCC--------------UCUAGCUCGguu -5'
21412 5' -62.2 NC_004812.1 + 5345 0.76 0.17654
Target:  5'- cGGGGgGaGGCCCGGGAGAggcggcagacUCGGGCUc- -3'
miRNA:   3'- -CCCCgC-CUGGGCCCUCU----------AGCUCGGuu -5'
21412 5' -62.2 NC_004812.1 + 5872 0.76 0.17654
Target:  5'- uGGGcGCGGGCCgGGGGGcgCGGGCgCGGg -3'
miRNA:   3'- -CCC-CGCCUGGgCCCUCuaGCUCG-GUU- -5'
21412 5' -62.2 NC_004812.1 + 95535 0.76 0.17654
Target:  5'- cGGGGCGG-CCCGGGGcGUCGcGCCc- -3'
miRNA:   3'- -CCCCGCCuGGGCCCUcUAGCuCGGuu -5'
21412 5' -62.2 NC_004812.1 + 123828 0.76 0.189749
Target:  5'- cGGGCgGGGCCCGGGcGccCGGGCCAAu -3'
miRNA:   3'- cCCCG-CCUGGGCCCuCuaGCUCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.