miRNA display CGI


Results 1 - 20 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21412 5' -62.2 NC_004812.1 + 114 0.66 0.656873
Target:  5'- cGGGGcCGGgagcccGCCCGGGAGcccgcccggGAGCCc- -3'
miRNA:   3'- -CCCC-GCC------UGGGCCCUCuag------CUCGGuu -5'
21412 5' -62.2 NC_004812.1 + 207 0.68 0.549687
Target:  5'- gGGGGaGGGCCCGGGucg-CGcAGCCc- -3'
miRNA:   3'- -CCCCgCCUGGGCCCucuaGC-UCGGuu -5'
21412 5' -62.2 NC_004812.1 + 523 0.7 0.414256
Target:  5'- cGGGGCGGGCCCGcGcGccCGGGCCc- -3'
miRNA:   3'- -CCCCGCCUGGGCcCuCuaGCUCGGuu -5'
21412 5' -62.2 NC_004812.1 + 2906 0.66 0.636298
Target:  5'- uGGGUGGaccGCCCGGGGGAgcccgccccguccUCG-GUCAc -3'
miRNA:   3'- cCCCGCC---UGGGCCCUCU-------------AGCuCGGUu -5'
21412 5' -62.2 NC_004812.1 + 3457 0.74 0.229275
Target:  5'- gGGGGuCGGGCCCGGcGGGcgGUCGcGCCGu -3'
miRNA:   3'- -CCCC-GCCUGGGCC-CUC--UAGCuCGGUu -5'
21412 5' -62.2 NC_004812.1 + 3503 0.71 0.350143
Target:  5'- cGGGcGCGGGCCCGGGgccggcggccccgGGggCgGGGCCGc -3'
miRNA:   3'- -CCC-CGCCUGGGCCC-------------UCuaG-CUCGGUu -5'
21412 5' -62.2 NC_004812.1 + 4639 0.69 0.457263
Target:  5'- gGGGGCGGgacGCCCgcgcgGGGAGGggcUCGccGGCCGu -3'
miRNA:   3'- -CCCCGCC---UGGG-----CCCUCU---AGC--UCGGUu -5'
21412 5' -62.2 NC_004812.1 + 5068 0.67 0.588349
Target:  5'- cGGGCGGgagACUCGGGGGGcCGggguccGGCCGGg -3'
miRNA:   3'- cCCCGCC---UGGGCCCUCUaGC------UCGGUU- -5'
21412 5' -62.2 NC_004812.1 + 5127 0.78 0.128339
Target:  5'- gGGGGCGGGCgcggaggCGGGAGGgccgCGGGCCAGa -3'
miRNA:   3'- -CCCCGCCUGg------GCCCUCUa---GCUCGGUU- -5'
21412 5' -62.2 NC_004812.1 + 5225 0.72 0.308076
Target:  5'- aGGGGCGGGggcuCCCGGGAGA---AGCaCAAg -3'
miRNA:   3'- -CCCCGCCU----GGGCCCUCUagcUCG-GUU- -5'
21412 5' -62.2 NC_004812.1 + 5285 0.7 0.431163
Target:  5'- cGGGGgGaGGCCCGGGAGGagaAGCCc- -3'
miRNA:   3'- -CCCCgC-CUGGGCCCUCUagcUCGGuu -5'
21412 5' -62.2 NC_004812.1 + 5345 0.76 0.17654
Target:  5'- cGGGGgGaGGCCCGGGAGAggcggcagacUCGGGCUc- -3'
miRNA:   3'- -CCCCgC-CUGGGCCCUCU----------AGCUCGGuu -5'
21412 5' -62.2 NC_004812.1 + 5392 0.67 0.568936
Target:  5'- cGGcGCGGGgCCGGGGGcGUCGccGGCCc- -3'
miRNA:   3'- cCC-CGCCUgGGCCCUC-UAGC--UCGGuu -5'
21412 5' -62.2 NC_004812.1 + 5483 0.66 0.666646
Target:  5'- gGGGGCGaGGgucacCCaCGGGAGGagGAcGCCGGg -3'
miRNA:   3'- -CCCCGC-CU-----GG-GCCCUCUagCU-CGGUU- -5'
21412 5' -62.2 NC_004812.1 + 5636 0.73 0.288212
Target:  5'- gGGGGcCGGGCCCGGGGucgcCGGGCgCGAg -3'
miRNA:   3'- -CCCC-GCCUGGGCCCUcua-GCUCG-GUU- -5'
21412 5' -62.2 NC_004812.1 + 5677 0.68 0.50255
Target:  5'- aGGGGCacggGGGgCCGGGGGucucccaGGGCCAc -3'
miRNA:   3'- -CCCCG----CCUgGGCCCUCuag----CUCGGUu -5'
21412 5' -62.2 NC_004812.1 + 5714 0.71 0.35089
Target:  5'- gGGGGCGGgggucuGCCgCGGGAGGagGGcGCCGGg -3'
miRNA:   3'- -CCCCGCC------UGG-GCCCUCUagCU-CGGUU- -5'
21412 5' -62.2 NC_004812.1 + 5872 0.76 0.17654
Target:  5'- uGGGcGCGGGCCgGGGGGcgCGGGCgCGGg -3'
miRNA:   3'- -CCC-CGCCUGGgCCCUCuaGCUCG-GUU- -5'
21412 5' -62.2 NC_004812.1 + 5953 0.74 0.229275
Target:  5'- gGGGGCaGGGCCCGGGgaggccgcgggGGggCGAGUCGc -3'
miRNA:   3'- -CCCCG-CCUGGGCCC-----------UCuaGCUCGGUu -5'
21412 5' -62.2 NC_004812.1 + 6157 0.68 0.493329
Target:  5'- gGGGGUcggGGGCCUGGGcggcggGGGUUGGGUCGc -3'
miRNA:   3'- -CCCCG---CCUGGGCCC------UCUAGCUCGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.