miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21427 3' -57 NC_004812.1 + 101675 1.07 0.003561
Target:  5'- uACCUCACGUACGACUCCGACUGCCCGc -3'
miRNA:   3'- -UGGAGUGCAUGCUGAGGCUGACGGGC- -5'
21427 3' -57 NC_004812.1 + 87146 0.75 0.402774
Target:  5'- aGCCgCugGUGCGgcGCUCCGACcGCCUGu -3'
miRNA:   3'- -UGGaGugCAUGC--UGAGGCUGaCGGGC- -5'
21427 3' -57 NC_004812.1 + 108828 0.73 0.520644
Target:  5'- uGCCUCACGUcucGCGAg-CCGAC-GCCCc -3'
miRNA:   3'- -UGGAGUGCA---UGCUgaGGCUGaCGGGc -5'
21427 3' -57 NC_004812.1 + 115475 0.73 0.520644
Target:  5'- cGCCgcgCGCGUGCGGCcgcgCCGgGCggcgGCCCGg -3'
miRNA:   3'- -UGGa--GUGCAUGCUGa---GGC-UGa---CGGGC- -5'
21427 3' -57 NC_004812.1 + 31376 0.72 0.559675
Target:  5'- cGCCU-GCGUGCGcACgcgCCuGCUGCCCGa -3'
miRNA:   3'- -UGGAgUGCAUGC-UGa--GGcUGACGGGC- -5'
21427 3' -57 NC_004812.1 + 475 0.72 0.559675
Target:  5'- cGCCU-GCGUGCGcACgcgCCuGCUGCCCGa -3'
miRNA:   3'- -UGGAgUGCAUGC-UGa--GGcUGACGGGC- -5'
21427 3' -57 NC_004812.1 + 142263 0.72 0.559675
Target:  5'- gGCCggcaagCACGUGCGGCUCCcggagcuccugGACgaggGCCCc -3'
miRNA:   3'- -UGGa-----GUGCAUGCUGAGG-----------CUGa---CGGGc -5'
21427 3' -57 NC_004812.1 + 56513 0.72 0.569567
Target:  5'- cGCC-CGCGgauauaagGCG-CUCCGGCgGCCCGg -3'
miRNA:   3'- -UGGaGUGCa-------UGCuGAGGCUGaCGGGC- -5'
21427 3' -57 NC_004812.1 + 78138 0.72 0.579503
Target:  5'- cGCCUCGCGgcgcACGAggCCGGCaucGCCCGc -3'
miRNA:   3'- -UGGAGUGCa---UGCUgaGGCUGa--CGGGC- -5'
21427 3' -57 NC_004812.1 + 54542 0.72 0.579503
Target:  5'- uCUUCGgGggcgGCGACUCCGACgGCgCCGg -3'
miRNA:   3'- uGGAGUgCa---UGCUGAGGCUGaCG-GGC- -5'
21427 3' -57 NC_004812.1 + 33770 0.72 0.599475
Target:  5'- cCCUCACGggcuCGGCggCCGACgacaucGCCCGc -3'
miRNA:   3'- uGGAGUGCau--GCUGa-GGCUGa-----CGGGC- -5'
21427 3' -57 NC_004812.1 + 34934 0.71 0.619541
Target:  5'- cACCUCgGCGUucACgGGCUCCaGCUGCUCGa -3'
miRNA:   3'- -UGGAG-UGCA--UG-CUGAGGcUGACGGGC- -5'
21427 3' -57 NC_004812.1 + 66302 0.71 0.659723
Target:  5'- cGCCUCGCGgcugGCGGCgcCCaGGC-GCCCGu -3'
miRNA:   3'- -UGGAGUGCa---UGCUGa-GG-CUGaCGGGC- -5'
21427 3' -57 NC_004812.1 + 15236 0.71 0.659723
Target:  5'- uGCUUCGCGcaggGCgGAC-CCGGCgGCCCGg -3'
miRNA:   3'- -UGGAGUGCa---UG-CUGaGGCUGaCGGGC- -5'
21427 3' -57 NC_004812.1 + 105014 0.7 0.669734
Target:  5'- cCCUCGCGccccGCGGugCCGACUGaCCCGg -3'
miRNA:   3'- uGGAGUGCa---UGCUgaGGCUGAC-GGGC- -5'
21427 3' -57 NC_004812.1 + 13015 0.7 0.669734
Target:  5'- -gCUC-CGUcgggGCGACUCCGGCgggGUCCGu -3'
miRNA:   3'- ugGAGuGCA----UGCUGAGGCUGa--CGGGC- -5'
21427 3' -57 NC_004812.1 + 55548 0.7 0.679716
Target:  5'- cGCCUCACGUACGuggccaccgggGC-CCuGCUGgCCCGc -3'
miRNA:   3'- -UGGAGUGCAUGC-----------UGaGGcUGAC-GGGC- -5'
21427 3' -57 NC_004812.1 + 78458 0.7 0.679716
Target:  5'- cACCUCGCGgGCGAUgCCGGCcucgUGCgCCGc -3'
miRNA:   3'- -UGGAGUGCaUGCUGaGGCUG----ACG-GGC- -5'
21427 3' -57 NC_004812.1 + 96537 0.7 0.689661
Target:  5'- cGCC-CGCGUGCG-CUCCGccCUGCCg- -3'
miRNA:   3'- -UGGaGUGCAUGCuGAGGCu-GACGGgc -5'
21427 3' -57 NC_004812.1 + 153850 0.7 0.699559
Target:  5'- cGCCgCGCaGUGCGACgUCCG-CUGgCCCGc -3'
miRNA:   3'- -UGGaGUG-CAUGCUG-AGGCuGAC-GGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.