miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21427 3' -57 NC_004812.1 + 100 0.66 0.888493
Target:  5'- gGCCggggCGCGcGCGGggCCGGgaGCCCGc -3'
miRNA:   3'- -UGGa---GUGCaUGCUgaGGCUgaCGGGC- -5'
21427 3' -57 NC_004812.1 + 475 0.72 0.559675
Target:  5'- cGCCU-GCGUGCGcACgcgCCuGCUGCCCGa -3'
miRNA:   3'- -UGGAgUGCAUGC-UGa--GGcUGACGGGC- -5'
21427 3' -57 NC_004812.1 + 809 0.68 0.785142
Target:  5'- cGCC-CACGgcCGGCcgggaagcggugUCCGAC-GCCCGg -3'
miRNA:   3'- -UGGaGUGCauGCUG------------AGGCUGaCGGGC- -5'
21427 3' -57 NC_004812.1 + 1481 0.68 0.794103
Target:  5'- uCCUCgGCGggcgGCGGCggagcgCCGGCcgGCCCGc -3'
miRNA:   3'- uGGAG-UGCa---UGCUGa-----GGCUGa-CGGGC- -5'
21427 3' -57 NC_004812.1 + 10276 0.68 0.794103
Target:  5'- cCCUCACGguuCGGCgCgGAgaGCCCGc -3'
miRNA:   3'- uGGAGUGCau-GCUGaGgCUgaCGGGC- -5'
21427 3' -57 NC_004812.1 + 10761 0.67 0.836632
Target:  5'- cGCCUgCGCGa--GACUCCGuCcccggGCCCGg -3'
miRNA:   3'- -UGGA-GUGCaugCUGAGGCuGa----CGGGC- -5'
21427 3' -57 NC_004812.1 + 13015 0.7 0.669734
Target:  5'- -gCUC-CGUcgggGCGACUCCGGCgggGUCCGu -3'
miRNA:   3'- ugGAGuGCA----UGCUGAGGCUGa--CGGGC- -5'
21427 3' -57 NC_004812.1 + 14401 0.66 0.881701
Target:  5'- gGCCagCACG-ACGACgCCGGCggccaGCCCc -3'
miRNA:   3'- -UGGa-GUGCaUGCUGaGGCUGa----CGGGc -5'
21427 3' -57 NC_004812.1 + 15236 0.71 0.659723
Target:  5'- uGCUUCGCGcaggGCgGAC-CCGGCgGCCCGg -3'
miRNA:   3'- -UGGAGUGCa---UG-CUGaGGCUGaCGGGC- -5'
21427 3' -57 NC_004812.1 + 15301 0.67 0.85244
Target:  5'- cGCCUCACGUcggGgGGgUCCGucuuCUGCuCCa -3'
miRNA:   3'- -UGGAGUGCA---UgCUgAGGCu---GACG-GGc -5'
21427 3' -57 NC_004812.1 + 15973 0.66 0.874694
Target:  5'- cGCCcCGCGgccgGCGGCgCCGACcccgcgGCCCc -3'
miRNA:   3'- -UGGaGUGCa---UGCUGaGGCUGa-----CGGGc -5'
21427 3' -57 NC_004812.1 + 16129 0.66 0.890489
Target:  5'- gACCUgGCGacgcagcUGCGcgaccgggacaucgaGCUCCGGCgcGCCCGa -3'
miRNA:   3'- -UGGAgUGC-------AUGC---------------UGAGGCUGa-CGGGC- -5'
21427 3' -57 NC_004812.1 + 20245 0.67 0.828456
Target:  5'- gGCCUcCGCGgGCaGCUCCGAgaGCgCCGc -3'
miRNA:   3'- -UGGA-GUGCaUGcUGAGGCUgaCG-GGC- -5'
21427 3' -57 NC_004812.1 + 23815 0.69 0.766831
Target:  5'- cGCCgCGCGgggcgGCGACccggggCCGGCccgGCCCGg -3'
miRNA:   3'- -UGGaGUGCa----UGCUGa-----GGCUGa--CGGGC- -5'
21427 3' -57 NC_004812.1 + 25192 0.66 0.888493
Target:  5'- gGCgUCGCG-GCGGCUCCGcCcGCCgGc -3'
miRNA:   3'- -UGgAGUGCaUGCUGAGGCuGaCGGgC- -5'
21427 3' -57 NC_004812.1 + 25428 0.69 0.757498
Target:  5'- gGCgUUCGCGcAgGACUCCGAC-GCCCc -3'
miRNA:   3'- -UG-GAGUGCaUgCUGAGGCUGaCGGGc -5'
21427 3' -57 NC_004812.1 + 26964 0.7 0.719183
Target:  5'- cGCCUgGCGgcCGcccuCUCCGACgaggGCCCc -3'
miRNA:   3'- -UGGAgUGCauGCu---GAGGCUGa---CGGGc -5'
21427 3' -57 NC_004812.1 + 28342 0.7 0.699559
Target:  5'- cGCCgCGCaGUGCGACgUCCG-CUGgCCCGc -3'
miRNA:   3'- -UGGaGUG-CAUGCUG-AGGCuGAC-GGGC- -5'
21427 3' -57 NC_004812.1 + 28584 0.67 0.836632
Target:  5'- uGCC-CGCGcucgACGGCcgcgccgCCGACUcGCCCGc -3'
miRNA:   3'- -UGGaGUGCa---UGCUGa------GGCUGA-CGGGC- -5'
21427 3' -57 NC_004812.1 + 29594 0.66 0.88239
Target:  5'- cCCUCGCGcgGCGGCgcgggCCGGCcggcgcuccgccgccGCCCGc -3'
miRNA:   3'- uGGAGUGCa-UGCUGa----GGCUGa--------------CGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.