Results 1 - 20 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21427 | 3' | -57 | NC_004812.1 | + | 145522 | 0.69 | 0.766831 |
Target: 5'- -aCUCAgaGUACGACUCCGACagcgaucGCCUc -3' miRNA: 3'- ugGAGUg-CAUGCUGAGGCUGa------CGGGc -5' |
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21427 | 3' | -57 | NC_004812.1 | + | 153850 | 0.7 | 0.699559 |
Target: 5'- cGCCgCGCaGUGCGACgUCCG-CUGgCCCGc -3' miRNA: 3'- -UGGaGUG-CAUGCUG-AGGCuGAC-GGGC- -5' |
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21427 | 3' | -57 | NC_004812.1 | + | 120065 | 0.7 | 0.709402 |
Target: 5'- cCCUCGCGcccgGCGACcCCGg--GCCCGg -3' miRNA: 3'- uGGAGUGCa---UGCUGaGGCugaCGGGC- -5' |
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21427 | 3' | -57 | NC_004812.1 | + | 152473 | 0.7 | 0.719183 |
Target: 5'- cGCCUgGCGgcCGcccuCUCCGACgaggGCCCc -3' miRNA: 3'- -UGGAgUGCauGCu---GAGGCUGa---CGGGc -5' |
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21427 | 3' | -57 | NC_004812.1 | + | 138700 | 0.69 | 0.738519 |
Target: 5'- gGCCUCGCGcccggACGAC-CgCGGCgcggcggGCCCGc -3' miRNA: 3'- -UGGAGUGCa----UGCUGaG-GCUGa------CGGGC- -5' |
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21427 | 3' | -57 | NC_004812.1 | + | 56231 | 0.69 | 0.748057 |
Target: 5'- gGCCUCGCG-GCG-CgCCGACUcGUCCGc -3' miRNA: 3'- -UGGAGUGCaUGCuGaGGCUGA-CGGGC- -5' |
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21427 | 3' | -57 | NC_004812.1 | + | 45619 | 0.69 | 0.757498 |
Target: 5'- cCCUCAUGggcgcgGgGACggCCGcGCUGCCCGc -3' miRNA: 3'- uGGAGUGCa-----UgCUGa-GGC-UGACGGGC- -5' |
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21427 | 3' | -57 | NC_004812.1 | + | 150936 | 0.69 | 0.757498 |
Target: 5'- gGCgUUCGCGcAgGACUCCGAC-GCCCc -3' miRNA: 3'- -UG-GAGUGCaUgCUGAGGCUGaCGGGc -5' |
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21427 | 3' | -57 | NC_004812.1 | + | 23815 | 0.69 | 0.766831 |
Target: 5'- cGCCgCGCGgggcgGCGACccggggCCGGCccgGCCCGg -3' miRNA: 3'- -UGGaGUGCa----UGCUGa-----GGCUGa--CGGGC- -5' |
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21427 | 3' | -57 | NC_004812.1 | + | 96537 | 0.7 | 0.689661 |
Target: 5'- cGCC-CGCGUGCG-CUCCGccCUGCCg- -3' miRNA: 3'- -UGGaGUGCAUGCuGAGGCu-GACGGgc -5' |
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21427 | 3' | -57 | NC_004812.1 | + | 78458 | 0.7 | 0.679716 |
Target: 5'- cACCUCGCGgGCGAUgCCGGCcucgUGCgCCGc -3' miRNA: 3'- -UGGAGUGCaUGCUGaGGCUG----ACG-GGC- -5' |
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21427 | 3' | -57 | NC_004812.1 | + | 105014 | 0.7 | 0.669734 |
Target: 5'- cCCUCGCGccccGCGGugCCGACUGaCCCGg -3' miRNA: 3'- uGGAGUGCa---UGCUgaGGCUGAC-GGGC- -5' |
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21427 | 3' | -57 | NC_004812.1 | + | 108828 | 0.73 | 0.520644 |
Target: 5'- uGCCUCACGUcucGCGAg-CCGAC-GCCCc -3' miRNA: 3'- -UGGAGUGCA---UGCUgaGGCUGaCGGGc -5' |
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21427 | 3' | -57 | NC_004812.1 | + | 115475 | 0.73 | 0.520644 |
Target: 5'- cGCCgcgCGCGUGCGGCcgcgCCGgGCggcgGCCCGg -3' miRNA: 3'- -UGGa--GUGCAUGCUGa---GGC-UGa---CGGGC- -5' |
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21427 | 3' | -57 | NC_004812.1 | + | 142263 | 0.72 | 0.559675 |
Target: 5'- gGCCggcaagCACGUGCGGCUCCcggagcuccugGACgaggGCCCc -3' miRNA: 3'- -UGGa-----GUGCAUGCUGAGG-----------CUGa---CGGGc -5' |
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21427 | 3' | -57 | NC_004812.1 | + | 475 | 0.72 | 0.559675 |
Target: 5'- cGCCU-GCGUGCGcACgcgCCuGCUGCCCGa -3' miRNA: 3'- -UGGAgUGCAUGC-UGa--GGcUGACGGGC- -5' |
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21427 | 3' | -57 | NC_004812.1 | + | 33770 | 0.72 | 0.599475 |
Target: 5'- cCCUCACGggcuCGGCggCCGACgacaucGCCCGc -3' miRNA: 3'- uGGAGUGCau--GCUGa-GGCUGa-----CGGGC- -5' |
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21427 | 3' | -57 | NC_004812.1 | + | 34934 | 0.71 | 0.619541 |
Target: 5'- cACCUCgGCGUucACgGGCUCCaGCUGCUCGa -3' miRNA: 3'- -UGGAG-UGCA--UG-CUGAGGcUGACGGGC- -5' |
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21427 | 3' | -57 | NC_004812.1 | + | 15236 | 0.71 | 0.659723 |
Target: 5'- uGCUUCGCGcaggGCgGAC-CCGGCgGCCCGg -3' miRNA: 3'- -UGGAGUGCa---UG-CUGaGGCUGaCGGGC- -5' |
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21427 | 3' | -57 | NC_004812.1 | + | 66302 | 0.71 | 0.659723 |
Target: 5'- cGCCUCGCGgcugGCGGCgcCCaGGC-GCCCGu -3' miRNA: 3'- -UGGAGUGCa---UGCUGa-GG-CUGaCGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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