miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 3' -61 NC_004812.1 + 153384 0.66 0.681167
Target:  5'- gGCCGCGCcuucggcccgccgCGCGcCUCGGGccCGCUg- -3'
miRNA:   3'- gCGGCGCGa------------GCGC-GAGCUCa-GCGAgu -5'
21439 3' -61 NC_004812.1 + 16501 0.66 0.685066
Target:  5'- gCGuCCGUGCUgCGCGCgcccgccaUGGGcgCGCUCAu -3'
miRNA:   3'- -GC-GGCGCGA-GCGCGa-------GCUCa-GCGAGU- -5'
21439 3' -61 NC_004812.1 + 55638 0.66 0.733089
Target:  5'- cCGCCgGCGCUCGCGgaCGuc-CGCg-- -3'
miRNA:   3'- -GCGG-CGCGAGCGCgaGCucaGCGagu -5'
21439 3' -61 NC_004812.1 + 12138 0.66 0.723614
Target:  5'- gGgCGCGCg-GCGC-CGGGccCGCUCAa -3'
miRNA:   3'- gCgGCGCGagCGCGaGCUCa-GCGAGU- -5'
21439 3' -61 NC_004812.1 + 140389 0.66 0.730254
Target:  5'- aCGCCGCGCUCGC-CaCGGacaccacccccaccGUCGC-CGc -3'
miRNA:   3'- -GCGGCGCGAGCGcGaGCU--------------CAGCGaGU- -5'
21439 3' -61 NC_004812.1 + 79118 0.66 0.685066
Target:  5'- uGCCGCGCggaucgcCGCGUUCuGGUCGg-CAg -3'
miRNA:   3'- gCGGCGCGa------GCGCGAGcUCAGCgaGU- -5'
21439 3' -61 NC_004812.1 + 25913 0.66 0.723614
Target:  5'- gCGCCGCGggCGCGCgucgCGAGagcCGgaCGa -3'
miRNA:   3'- -GCGGCGCgaGCGCGa---GCUCa--GCgaGU- -5'
21439 3' -61 NC_004812.1 + 152868 0.66 0.714066
Target:  5'- gCGCCGCuGCUgGCGCgCGgcccgcgccaGGUgCGCUCc -3'
miRNA:   3'- -GCGGCG-CGAgCGCGaGC----------UCA-GCGAGu -5'
21439 3' -61 NC_004812.1 + 8332 0.66 0.685066
Target:  5'- gCGCCGcCGC-CGCGCUgcCGGG-CGCg-- -3'
miRNA:   3'- -GCGGC-GCGaGCGCGA--GCUCaGCGagu -5'
21439 3' -61 NC_004812.1 + 108370 0.66 0.685066
Target:  5'- uCGCCGCGCUgcaggaggcccUGgGCcgCGGGgcucCGCUCGc -3'
miRNA:   3'- -GCGGCGCGA-----------GCgCGa-GCUCa---GCGAGU- -5'
21439 3' -61 NC_004812.1 + 87505 0.66 0.723614
Target:  5'- gGCCGCgacaGCUCGUgGCUgGAGaUGUUCAc -3'
miRNA:   3'- gCGGCG----CGAGCG-CGAgCUCaGCGAGU- -5'
21439 3' -61 NC_004812.1 + 150610 0.66 0.714066
Target:  5'- cCGCCGCGCgccgacgCGCGUUcCGGGgCGUg-- -3'
miRNA:   3'- -GCGGCGCGa------GCGCGA-GCUCaGCGagu -5'
21439 3' -61 NC_004812.1 + 154979 0.66 0.694784
Target:  5'- gGCCGCGCgggacccgCGCGCaCG-GUCcCUCGc -3'
miRNA:   3'- gCGGCGCGa-------GCGCGaGCuCAGcGAGU- -5'
21439 3' -61 NC_004812.1 + 112939 0.66 0.714066
Target:  5'- gGcCCGCGCa-GCGC-CGuGUCGCUg- -3'
miRNA:   3'- gC-GGCGCGagCGCGaGCuCAGCGAgu -5'
21439 3' -61 NC_004812.1 + 101983 0.66 0.694784
Target:  5'- cCGCCGC-C-CGCGCgggGGGUCGCg-- -3'
miRNA:   3'- -GCGGCGcGaGCGCGag-CUCAGCGagu -5'
21439 3' -61 NC_004812.1 + 94152 0.66 0.733089
Target:  5'- cCGCCGCGCUgGgGUUCGuGg-GUUCc -3'
miRNA:   3'- -GCGGCGCGAgCgCGAGCuCagCGAGu -5'
21439 3' -61 NC_004812.1 + 84740 0.66 0.694784
Target:  5'- gCGCCGUGCgCGCGCUCcugcagGGGaUCGUgCGg -3'
miRNA:   3'- -GCGGCGCGaGCGCGAG------CUC-AGCGaGU- -5'
21439 3' -61 NC_004812.1 + 73338 0.66 0.733089
Target:  5'- gCGCCGCGCUCGgaaggcacaUGCgacCGAGcaCGCUa- -3'
miRNA:   3'- -GCGGCGCGAGC---------GCGa--GCUCa-GCGAgu -5'
21439 3' -61 NC_004812.1 + 101199 0.66 0.733089
Target:  5'- -aCCGCGC-CGCGC-CGGGggUGUUCGa -3'
miRNA:   3'- gcGGCGCGaGCGCGaGCUCa-GCGAGU- -5'
21439 3' -61 NC_004812.1 + 143449 0.66 0.685066
Target:  5'- aGCUGCGCguguugucUCGCGCgUCGcuGUCGC-CGg -3'
miRNA:   3'- gCGGCGCG--------AGCGCG-AGCu-CAGCGaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.