miRNA display CGI


Results 1 - 20 of 180 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 3' -61 NC_004812.1 + 174 0.68 0.598653
Target:  5'- cCGCCGCGCguuuauuuucgcgcgCGCGCcgccgggggagggccCGGGUCGCgCAg -3'
miRNA:   3'- -GCGGCGCGa--------------GCGCGa--------------GCUCAGCGaGU- -5'
21439 3' -61 NC_004812.1 + 663 0.68 0.586903
Target:  5'- aCGCCGCGCcCGgGCggcgCGAGgggagCGCg-- -3'
miRNA:   3'- -GCGGCGCGaGCgCGa---GCUCa----GCGagu -5'
21439 3' -61 NC_004812.1 + 1774 0.67 0.665517
Target:  5'- aGCCGCGCccCGCGCcgaCGGGagCGCgugCAu -3'
miRNA:   3'- gCGGCGCGa-GCGCGa--GCUCa-GCGa--GU- -5'
21439 3' -61 NC_004812.1 + 1954 0.71 0.404059
Target:  5'- uGCCGCGCgCGCGC-CGGG-CGC-CGg -3'
miRNA:   3'- gCGGCGCGaGCGCGaGCUCaGCGaGU- -5'
21439 3' -61 NC_004812.1 + 2432 0.68 0.577144
Target:  5'- aGCgCGCGCagGCGCggugCGAGUgCGcCUCGc -3'
miRNA:   3'- gCG-GCGCGagCGCGa---GCUCA-GC-GAGU- -5'
21439 3' -61 NC_004812.1 + 4607 0.7 0.482425
Target:  5'- uGCCGCGCcgcgUCGCccaGCUCGGG-CGCcCAc -3'
miRNA:   3'- gCGGCGCG----AGCG---CGAGCUCaGCGaGU- -5'
21439 3' -61 NC_004812.1 + 5270 0.69 0.510155
Target:  5'- cCGCCGCgGCccCGCGCUCG-GcCGaCUCGg -3'
miRNA:   3'- -GCGGCG-CGa-GCGCGAGCuCaGC-GAGU- -5'
21439 3' -61 NC_004812.1 + 5839 0.68 0.567422
Target:  5'- gGCCG-GCggCGCGCUCGGGagGCg-- -3'
miRNA:   3'- gCGGCgCGa-GCGCGAGCUCagCGagu -5'
21439 3' -61 NC_004812.1 + 7870 0.67 0.655701
Target:  5'- aGCgGCGCccCGCGCgUCGcGUCGCg-- -3'
miRNA:   3'- gCGgCGCGa-GCGCG-AGCuCAGCGagu -5'
21439 3' -61 NC_004812.1 + 8332 0.66 0.685066
Target:  5'- gCGCCGcCGC-CGCGCUgcCGGG-CGCg-- -3'
miRNA:   3'- -GCGGC-GCGaGCGCGA--GCUCaGCGagu -5'
21439 3' -61 NC_004812.1 + 9474 0.67 0.645868
Target:  5'- aCGCCGCGa-CGUGCUCGuG-CGCa-- -3'
miRNA:   3'- -GCGGCGCgaGCGCGAGCuCaGCGagu -5'
21439 3' -61 NC_004812.1 + 9821 0.68 0.605523
Target:  5'- aGCCGCcCUCGCGgcccucguugggcCUCGAcGaCGCUCAc -3'
miRNA:   3'- gCGGCGcGAGCGC-------------GAGCU-CaGCGAGU- -5'
21439 3' -61 NC_004812.1 + 12138 0.66 0.723614
Target:  5'- gGgCGCGCg-GCGC-CGGGccCGCUCAa -3'
miRNA:   3'- gCgGCGCGagCGCGaGCUCa-GCGAGU- -5'
21439 3' -61 NC_004812.1 + 12230 0.67 0.626178
Target:  5'- uCGUgGCGCUCGCGCagGGGguugagGUUCAu -3'
miRNA:   3'- -GCGgCGCGAGCGCGagCUCag----CGAGU- -5'
21439 3' -61 NC_004812.1 + 12416 0.71 0.404059
Target:  5'- uCGCCgGCGCUCGCGUgcuUCcaGGUCGuCUCGa -3'
miRNA:   3'- -GCGG-CGCGAGCGCG---AGc-UCAGC-GAGU- -5'
21439 3' -61 NC_004812.1 + 12895 0.7 0.458995
Target:  5'- aGCgGCGCUCggugcccccggggcgGCGCggCGAG-CGCUCGa -3'
miRNA:   3'- gCGgCGCGAG---------------CGCGa-GCUCaGCGAGU- -5'
21439 3' -61 NC_004812.1 + 12990 0.78 0.158652
Target:  5'- gGCCGCGCUCGCGCUCucGcCGC-CGc -3'
miRNA:   3'- gCGGCGCGAGCGCGAGcuCaGCGaGU- -5'
21439 3' -61 NC_004812.1 + 15139 0.67 0.655701
Target:  5'- gGCCGCG-UCGC-CUCGGGg-GCUCc -3'
miRNA:   3'- gCGGCGCgAGCGcGAGCUCagCGAGu -5'
21439 3' -61 NC_004812.1 + 15811 0.69 0.529006
Target:  5'- gGCCGC-CUCGCGcCUCGuG-CgGCUCAu -3'
miRNA:   3'- gCGGCGcGAGCGC-GAGCuCaG-CGAGU- -5'
21439 3' -61 NC_004812.1 + 16501 0.66 0.685066
Target:  5'- gCGuCCGUGCUgCGCGCgcccgccaUGGGcgCGCUCAu -3'
miRNA:   3'- -GC-GGCGCGA-GCGCGa-------GCUCa-GCGAGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.