miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 3' -61 NC_004812.1 + 130115 0.7 0.482426
Target:  5'- uGCCGCGCcgcgUCGCccaGCUCGGG-CGCcCAc -3'
miRNA:   3'- gCGGCGCG----AGCG---CGAGCUCaGCGaGU- -5'
21439 3' -61 NC_004812.1 + 154083 0.72 0.379777
Target:  5'- gCGCCGUGCUgccCGCGCUCGAcgGcCGCg-- -3'
miRNA:   3'- -GCGGCGCGA---GCGCGAGCU--CaGCGagu -5'
21439 3' -61 NC_004812.1 + 68894 0.71 0.404059
Target:  5'- gCGCCGC-CUCcCGCUCGcGGUCGC-CAu -3'
miRNA:   3'- -GCGGCGcGAGcGCGAGC-UCAGCGaGU- -5'
21439 3' -61 NC_004812.1 + 127462 0.71 0.404059
Target:  5'- uGCCGCGCgCGCGC-CGGG-CGC-CGg -3'
miRNA:   3'- gCGGCGCGaGCGCGaGCUCaGCGaGU- -5'
21439 3' -61 NC_004812.1 + 77042 0.71 0.412368
Target:  5'- uGgCGCGCacgCGCGCggCGAGgCGCUCGc -3'
miRNA:   3'- gCgGCGCGa--GCGCGa-GCUCaGCGAGU- -5'
21439 3' -61 NC_004812.1 + 108535 0.7 0.446633
Target:  5'- cCGCCGaGUaCGCGCccggCGAGUCGCUg- -3'
miRNA:   3'- -GCGGCgCGaGCGCGa---GCUCAGCGAgu -5'
21439 3' -61 NC_004812.1 + 57860 0.7 0.458995
Target:  5'- cCGCCGCGCUCcaggGCGCgggCGGGaacgccaucaucuccUCGCUgAg -3'
miRNA:   3'- -GCGGCGCGAG----CGCGa--GCUC---------------AGCGAgU- -5'
21439 3' -61 NC_004812.1 + 23452 0.7 0.464349
Target:  5'- gGCCGCGUUugcCGCGCUCGucGUC-CUCc -3'
miRNA:   3'- gCGGCGCGA---GCGCGAGCu-CAGcGAGu -5'
21439 3' -61 NC_004812.1 + 30349 0.7 0.464349
Target:  5'- aCGCCaGCgGCgUCGCG-UCGAGcCGCUCGg -3'
miRNA:   3'- -GCGG-CG-CG-AGCGCgAGCUCaGCGAGU- -5'
21439 3' -61 NC_004812.1 + 56569 0.72 0.356491
Target:  5'- aGgCGCGCaCGCGCUCGAG-CGCg-- -3'
miRNA:   3'- gCgGCGCGaGCGCGAGCUCaGCGagu -5'
21439 3' -61 NC_004812.1 + 95587 0.73 0.334228
Target:  5'- gGCCGCGCcCGCGCgCGGG-CGCggCAg -3'
miRNA:   3'- gCGGCGCGaGCGCGaGCUCaGCGa-GU- -5'
21439 3' -61 NC_004812.1 + 123573 0.73 0.327036
Target:  5'- gGCgGCGCggcCGgGCUCGAGUCGUccgUCGu -3'
miRNA:   3'- gCGgCGCGa--GCgCGAGCUCAGCG---AGU- -5'
21439 3' -61 NC_004812.1 + 113678 0.76 0.202095
Target:  5'- gCGgCGUGCUCGCGCUCGAcgaGCUCu -3'
miRNA:   3'- -GCgGCGCGAGCGCGAGCUcagCGAGu -5'
21439 3' -61 NC_004812.1 + 66528 0.76 0.206967
Target:  5'- aCGCCGCgguaccGCUCGCGCUCGcAGgCGCUgGg -3'
miRNA:   3'- -GCGGCG------CGAGCGCGAGC-UCaGCGAgU- -5'
21439 3' -61 NC_004812.1 + 100684 0.75 0.238364
Target:  5'- gGCCcgGCGCUCGCGCgggCGuGUCGCa-- -3'
miRNA:   3'- gCGG--CGCGAGCGCGa--GCuCAGCGagu -5'
21439 3' -61 NC_004812.1 + 143679 0.75 0.255507
Target:  5'- gGCCccgGCGaucgUCGCGCUCGAG-CGCUCGc -3'
miRNA:   3'- gCGG---CGCg---AGCGCGAGCUCaGCGAGU- -5'
21439 3' -61 NC_004812.1 + 61210 0.75 0.261443
Target:  5'- uCGCCGgGCgcgCGgGCUuccgggucgcgCGAGUCGCUCGu -3'
miRNA:   3'- -GCGGCgCGa--GCgCGA-----------GCUCAGCGAGU- -5'
21439 3' -61 NC_004812.1 + 71961 0.74 0.279921
Target:  5'- uGCCGCGacgCGCGCcgCGGGagGCUCAc -3'
miRNA:   3'- gCGGCGCga-GCGCGa-GCUCagCGAGU- -5'
21439 3' -61 NC_004812.1 + 152608 0.74 0.286307
Target:  5'- uGCCGCGC-CGUGCUgGAGgCGCUg- -3'
miRNA:   3'- gCGGCGCGaGCGCGAgCUCaGCGAgu -5'
21439 3' -61 NC_004812.1 + 153310 0.73 0.308878
Target:  5'- gCGCCGCGCUcgccuucgacccgcgCGCGCUgGccUCGCUCGc -3'
miRNA:   3'- -GCGGCGCGA---------------GCGCGAgCucAGCGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.