miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21476 5' -57.9 NC_004812.1 + 72925 1.07 0.002103
Target:  5'- gGACUCCGUUCUGCUGGCGGCCAAGCUg -3'
miRNA:   3'- -CUGAGGCAAGACGACCGCCGGUUCGA- -5'
21476 5' -57.9 NC_004812.1 + 117395 0.76 0.281884
Target:  5'- uGGC-CCGggCcacGCUGGUGGCCGAGCUg -3'
miRNA:   3'- -CUGaGGCaaGa--CGACCGCCGGUUCGA- -5'
21476 5' -57.9 NC_004812.1 + 78504 0.74 0.346376
Target:  5'- -cCUCCGUccgugUCcgGgUGGCGGCCGAGCa -3'
miRNA:   3'- cuGAGGCA-----AGa-CgACCGCCGGUUCGa -5'
21476 5' -57.9 NC_004812.1 + 144389 0.74 0.378252
Target:  5'- aGC-CCGUgCUGCUGGCGGCguGGUa -3'
miRNA:   3'- cUGaGGCAaGACGACCGCCGguUCGa -5'
21476 5' -57.9 NC_004812.1 + 104164 0.73 0.403419
Target:  5'- uGGCcgUCGggCUGCUGGUccuGGCCGGGCUg -3'
miRNA:   3'- -CUGa-GGCaaGACGACCG---CCGGUUCGA- -5'
21476 5' -57.9 NC_004812.1 + 152654 0.72 0.484868
Target:  5'- uGGCcgCCGUgcccggGCUGGCGGCCGcGCg -3'
miRNA:   3'- -CUGa-GGCAaga---CGACCGCCGGUuCGa -5'
21476 5' -57.9 NC_004812.1 + 27145 0.72 0.484868
Target:  5'- uGGCcgCCGUgcccggGCUGGCGGCCGcGCg -3'
miRNA:   3'- -CUGa-GGCAaga---CGACCGCCGGUuCGa -5'
21476 5' -57.9 NC_004812.1 + 137177 0.72 0.490582
Target:  5'- aGCUCCGUgcacgaggcgaggCUGCUgcGGCGGCUGAGUc -3'
miRNA:   3'- cUGAGGCAa------------GACGA--CCGCCGGUUCGa -5'
21476 5' -57.9 NC_004812.1 + 40079 0.71 0.523519
Target:  5'- -uUUCCGggCggcggGCggcgGGCGGCCGGGCg -3'
miRNA:   3'- cuGAGGCaaGa----CGa---CCGCCGGUUCGa -5'
21476 5' -57.9 NC_004812.1 + 68805 0.7 0.563292
Target:  5'- aGGCUCUGguugUUGUaGGCGGCCAcgAGCg -3'
miRNA:   3'- -CUGAGGCaa--GACGaCCGCCGGU--UCGa -5'
21476 5' -57.9 NC_004812.1 + 80313 0.7 0.573371
Target:  5'- cGACcgcgCCGcgCUGCUggaGGCGGCCGcGCg -3'
miRNA:   3'- -CUGa---GGCaaGACGA---CCGCCGGUuCGa -5'
21476 5' -57.9 NC_004812.1 + 116315 0.7 0.58349
Target:  5'- gGGCggCCGUUgucgccCUGCUGGCGGCgGcGCa -3'
miRNA:   3'- -CUGa-GGCAA------GACGACCGCCGgUuCGa -5'
21476 5' -57.9 NC_004812.1 + 73212 0.7 0.603828
Target:  5'- cGAC-CCG-UCUGCUggaGGCGGCC-GGCc -3'
miRNA:   3'- -CUGaGGCaAGACGA---CCGCCGGuUCGa -5'
21476 5' -57.9 NC_004812.1 + 64784 0.7 0.603828
Target:  5'- gGACUCCGUcuUCgUGCUGugccGCGGCCugacGGCc -3'
miRNA:   3'- -CUGAGGCA--AG-ACGAC----CGCCGGu---UCGa -5'
21476 5' -57.9 NC_004812.1 + 55396 0.69 0.614031
Target:  5'- cGGCgCCc--CUGCUGGCGGCCGcggGGCc -3'
miRNA:   3'- -CUGaGGcaaGACGACCGCCGGU---UCGa -5'
21476 5' -57.9 NC_004812.1 + 147978 0.69 0.624248
Target:  5'- cGCUCCGUgcUCaugGCgccgGGCGGCgGGGCc -3'
miRNA:   3'- cUGAGGCA--AGa--CGa---CCGCCGgUUCGa -5'
21476 5' -57.9 NC_004812.1 + 145659 0.69 0.644693
Target:  5'- gGugUCCGUga-GCUGGCGccgaCCGAGCUc -3'
miRNA:   3'- -CugAGGCAagaCGACCGCc---GGUUCGA- -5'
21476 5' -57.9 NC_004812.1 + 101686 0.69 0.644693
Target:  5'- cGACUCCGacugCccGCUGGUGGCCAucgucgagugcgAGCc -3'
miRNA:   3'- -CUGAGGCaa--Ga-CGACCGCCGGU------------UCGa -5'
21476 5' -57.9 NC_004812.1 + 123577 0.69 0.665098
Target:  5'- gGGCcgCCGggg-GC-GGCGGCCGAGCa -3'
miRNA:   3'- -CUGa-GGCaagaCGaCCGCCGGUUCGa -5'
21476 5' -57.9 NC_004812.1 + 76241 0.69 0.665098
Target:  5'- aACUCCcc-CUcGCaGGCGGCCAGGCc -3'
miRNA:   3'- cUGAGGcaaGA-CGaCCGCCGGUUCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.