miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21476 5' -57.9 NC_004812.1 + 4521 0.66 0.800952
Target:  5'- cGACcagggCGcgCUGCUgGGCGGCCGcAGCUu -3'
miRNA:   3'- -CUGag---GCaaGACGA-CCGCCGGU-UCGA- -5'
21476 5' -57.9 NC_004812.1 + 15937 0.66 0.809804
Target:  5'- cGACcCCGccCUGCcgGGCuucGGCCGGGCg -3'
miRNA:   3'- -CUGaGGCaaGACGa-CCG---CCGGUUCGa -5'
21476 5' -57.9 NC_004812.1 + 19809 0.67 0.773516
Target:  5'- cGGCUCCucgCUGCUGcGCaucucGGCCAgcAGCUc -3'
miRNA:   3'- -CUGAGGcaaGACGAC-CG-----CCGGU--UCGA- -5'
21476 5' -57.9 NC_004812.1 + 27145 0.72 0.484868
Target:  5'- uGGCcgCCGUgcccggGCUGGCGGCCGcGCg -3'
miRNA:   3'- -CUGa-GGCAaga---CGACCGCCGGUuCGa -5'
21476 5' -57.9 NC_004812.1 + 27350 0.66 0.809804
Target:  5'- cGGCgccgCCGcgccgCUGCUGGCGcgcggcccgcGCCAGGUg -3'
miRNA:   3'- -CUGa---GGCaa---GACGACCGC----------CGGUUCGa -5'
21476 5' -57.9 NC_004812.1 + 35422 0.66 0.800952
Target:  5'- cGACcagggCGcgCUGCUgGGCGGCCGcAGCUu -3'
miRNA:   3'- -CUGag---GCaaGACGA-CCGCCGGU-UCGA- -5'
21476 5' -57.9 NC_004812.1 + 40079 0.71 0.523519
Target:  5'- -uUUCCGggCggcggGCggcgGGCGGCCGGGCg -3'
miRNA:   3'- cuGAGGCaaGa----CGa---CCGCCGGUUCGa -5'
21476 5' -57.9 NC_004812.1 + 40830 0.68 0.695484
Target:  5'- cGCUgCCGUUguguugGCUGGUGGUUAGGCUu -3'
miRNA:   3'- cUGA-GGCAAga----CGACCGCCGGUUCGA- -5'
21476 5' -57.9 NC_004812.1 + 42832 0.66 0.818495
Target:  5'- -uCUCCGUcgUCUGgcgcUUGGCgccgucGGCCAGGCg -3'
miRNA:   3'- cuGAGGCA--AGAC----GACCG------CCGGUUCGa -5'
21476 5' -57.9 NC_004812.1 + 46436 0.66 0.809804
Target:  5'- cGCUCCccuGggC-GCUGGCgcugGGCCAGGCg -3'
miRNA:   3'- cUGAGG---CaaGaCGACCG----CCGGUUCGa -5'
21476 5' -57.9 NC_004812.1 + 48861 0.66 0.791947
Target:  5'- cGGCUCCccaagacgcaGUUCgcgGCcgcgGGCGGCCGcuacAGCg -3'
miRNA:   3'- -CUGAGG----------CAAGa--CGa---CCGCCGGU----UCGa -5'
21476 5' -57.9 NC_004812.1 + 55396 0.69 0.614031
Target:  5'- cGGCgCCc--CUGCUGGCGGCCGcggGGCc -3'
miRNA:   3'- -CUGaGGcaaGACGACCGCCGGU---UCGa -5'
21476 5' -57.9 NC_004812.1 + 58953 0.67 0.735215
Target:  5'- uGGCcugCCGUgagGCUGGgGGCCGAGa- -3'
miRNA:   3'- -CUGa--GGCAagaCGACCgCCGGUUCga -5'
21476 5' -57.9 NC_004812.1 + 63843 0.66 0.791947
Target:  5'- gGACUCg---CUGCUGGUGGgCCA-GCUc -3'
miRNA:   3'- -CUGAGgcaaGACGACCGCC-GGUuCGA- -5'
21476 5' -57.9 NC_004812.1 + 64784 0.7 0.603828
Target:  5'- gGACUCCGUcuUCgUGCUGugccGCGGCCugacGGCc -3'
miRNA:   3'- -CUGAGGCA--AG-ACGAC----CGCCGGu---UCGa -5'
21476 5' -57.9 NC_004812.1 + 68805 0.7 0.563292
Target:  5'- aGGCUCUGguugUUGUaGGCGGCCAcgAGCg -3'
miRNA:   3'- -CUGAGGCaa--GACGaCCGCCGGU--UCGa -5'
21476 5' -57.9 NC_004812.1 + 72925 1.07 0.002103
Target:  5'- gGACUCCGUUCUGCUGGCGGCCAAGCUg -3'
miRNA:   3'- -CUGAGGCAAGACGACCGCCGGUUCGA- -5'
21476 5' -57.9 NC_004812.1 + 73212 0.7 0.603828
Target:  5'- cGAC-CCG-UCUGCUggaGGCGGCC-GGCc -3'
miRNA:   3'- -CUGaGGCaAGACGA---CCGCCGGuUCGa -5'
21476 5' -57.9 NC_004812.1 + 75435 0.66 0.809804
Target:  5'- aGCUCCGcc--GC-GGCGGCCGGGUc -3'
miRNA:   3'- cUGAGGCaagaCGaCCGCCGGUUCGa -5'
21476 5' -57.9 NC_004812.1 + 76241 0.69 0.665098
Target:  5'- aACUCCcc-CUcGCaGGCGGCCAGGCc -3'
miRNA:   3'- cUGAGGcaaGA-CGaCCGCCGGUUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.