miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21476 5' -57.9 NC_004812.1 + 152858 0.66 0.809804
Target:  5'- cGGCgccgCCGcgccgCUGCUGGCGcgcggcccgcGCCAGGUg -3'
miRNA:   3'- -CUGa---GGCaa---GACGACCGC----------CGGUUCGa -5'
21476 5' -57.9 NC_004812.1 + 124231 0.67 0.754581
Target:  5'- uGGCUCCGcggCgGCgGGgGGCCGGGUc -3'
miRNA:   3'- -CUGAGGCaa-GaCGaCCgCCGGUUCGa -5'
21476 5' -57.9 NC_004812.1 + 107681 0.67 0.764107
Target:  5'- cGGCgCCaagCUGgUGGCgGGCCAGGCg -3'
miRNA:   3'- -CUGaGGcaaGACgACCG-CCGGUUCGa -5'
21476 5' -57.9 NC_004812.1 + 63843 0.66 0.791947
Target:  5'- gGACUCg---CUGCUGGUGGgCCA-GCUc -3'
miRNA:   3'- -CUGAGgcaaGACGACCGCC-GGUuCGA- -5'
21476 5' -57.9 NC_004812.1 + 135210 0.66 0.791947
Target:  5'- -uCUCCGUcuccucgucgUCUGUguUGG-GGCCGGGCg -3'
miRNA:   3'- cuGAGGCA----------AGACG--ACCgCCGGUUCGa -5'
21476 5' -57.9 NC_004812.1 + 48861 0.66 0.791947
Target:  5'- cGGCUCCccaagacgcaGUUCgcgGCcgcgGGCGGCCGcuacAGCg -3'
miRNA:   3'- -CUGAGG----------CAAGa--CGa---CCGCCGGU----UCGa -5'
21476 5' -57.9 NC_004812.1 + 4521 0.66 0.800952
Target:  5'- cGACcagggCGcgCUGCUgGGCGGCCGcAGCUu -3'
miRNA:   3'- -CUGag---GCaaGACGA-CCGCCGGU-UCGA- -5'
21476 5' -57.9 NC_004812.1 + 15937 0.66 0.809804
Target:  5'- cGACcCCGccCUGCcgGGCuucGGCCGGGCg -3'
miRNA:   3'- -CUGaGGCaaGACGa-CCG---CCGGUUCGa -5'
21476 5' -57.9 NC_004812.1 + 46436 0.66 0.809804
Target:  5'- cGCUCCccuGggC-GCUGGCgcugGGCCAGGCg -3'
miRNA:   3'- cUGAGG---CaaGaCGACCG----CCGGUUCGa -5'
21476 5' -57.9 NC_004812.1 + 106713 0.67 0.754581
Target:  5'- cGCUgCGcgugCUGCUGGCGGgCGAGg- -3'
miRNA:   3'- cUGAgGCaa--GACGACCGCCgGUUCga -5'
21476 5' -57.9 NC_004812.1 + 58953 0.67 0.735215
Target:  5'- uGGCcugCCGUgagGCUGGgGGCCGAGa- -3'
miRNA:   3'- -CUGa--GGCAagaCGACCgCCGGUUCga -5'
21476 5' -57.9 NC_004812.1 + 107579 0.68 0.715492
Target:  5'- cGACggacaUGUacaUCUGCaggaUGGUGGCCAGGCa -3'
miRNA:   3'- -CUGag---GCA---AGACG----ACCGCCGGUUCGa -5'
21476 5' -57.9 NC_004812.1 + 144389 0.74 0.378252
Target:  5'- aGC-CCGUgCUGCUGGCGGCguGGUa -3'
miRNA:   3'- cUGaGGCAaGACGACCGCCGguUCGa -5'
21476 5' -57.9 NC_004812.1 + 152654 0.72 0.484868
Target:  5'- uGGCcgCCGUgcccggGCUGGCGGCCGcGCg -3'
miRNA:   3'- -CUGa-GGCAaga---CGACCGCCGGUuCGa -5'
21476 5' -57.9 NC_004812.1 + 137177 0.72 0.490582
Target:  5'- aGCUCCGUgcacgaggcgaggCUGCUgcGGCGGCUGAGUc -3'
miRNA:   3'- cUGAGGCAa------------GACGA--CCGCCGGUUCGa -5'
21476 5' -57.9 NC_004812.1 + 64784 0.7 0.603828
Target:  5'- gGACUCCGUcuUCgUGCUGugccGCGGCCugacGGCc -3'
miRNA:   3'- -CUGAGGCA--AG-ACGAC----CGCCGGu---UCGa -5'
21476 5' -57.9 NC_004812.1 + 147978 0.69 0.624248
Target:  5'- cGCUCCGUgcUCaugGCgccgGGCGGCgGGGCc -3'
miRNA:   3'- cUGAGGCA--AGa--CGa---CCGCCGgUUCGa -5'
21476 5' -57.9 NC_004812.1 + 76241 0.69 0.665098
Target:  5'- aACUCCcc-CUcGCaGGCGGCCAGGCc -3'
miRNA:   3'- cUGAGGcaaGA-CGaCCGCCGGUUCGa -5'
21476 5' -57.9 NC_004812.1 + 115807 0.68 0.695484
Target:  5'- cGGCagCCGUUgUGaggcgaGGCGGCCGGGCc -3'
miRNA:   3'- -CUGa-GGCAAgACga----CCGCCGGUUCGa -5'
21476 5' -57.9 NC_004812.1 + 78557 0.68 0.705519
Target:  5'- gGGCUCCGggg-GCUGGCGaucccgcagcgcGUCGAGCg -3'
miRNA:   3'- -CUGAGGCaagaCGACCGC------------CGGUUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.