miRNA display CGI


Results 21 - 40 of 233 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21482 3' -56.2 NC_004812.1 + 106981 0.72 0.598983
Target:  5'- gGCGCCUCCCCcucCCGccccGCGggcgCCCCu -3'
miRNA:   3'- gUGUGGAGGGGaaaGGU----CGCaa--GGGG- -5'
21482 3' -56.2 NC_004812.1 + 95396 0.72 0.60912
Target:  5'- aCACACCccagCCCCcccgcCCAuCGUUCCCCc -3'
miRNA:   3'- -GUGUGGa---GGGGaaa--GGUcGCAAGGGG- -5'
21482 3' -56.2 NC_004812.1 + 1594 0.72 0.619274
Target:  5'- gCACGgCUCCCCgccUCCGG-GcgCCCCg -3'
miRNA:   3'- -GUGUgGAGGGGaa-AGGUCgCaaGGGG- -5'
21482 3' -56.2 NC_004812.1 + 127102 0.72 0.619274
Target:  5'- gCACGgCUCCCCgccUCCGG-GcgCCCCg -3'
miRNA:   3'- -GUGUgGAGGGGaa-AGGUCgCaaGGGG- -5'
21482 3' -56.2 NC_004812.1 + 55774 0.72 0.629438
Target:  5'- uCGC-CCUCCCCggcgUCgCGGCGcccgCCCCc -3'
miRNA:   3'- -GUGuGGAGGGGaa--AG-GUCGCaa--GGGG- -5'
21482 3' -56.2 NC_004812.1 + 151966 0.72 0.629438
Target:  5'- aGCcCCUCCCCgcgCgGGCGUcccgCCCCc -3'
miRNA:   3'- gUGuGGAGGGGaaaGgUCGCAa---GGGG- -5'
21482 3' -56.2 NC_004812.1 + 121065 0.72 0.629438
Target:  5'- aGCcCCUCCCCgcgCgGGCGUcccgCCCCc -3'
miRNA:   3'- gUGuGGAGGGGaaaGgUCGCAa---GGGG- -5'
21482 3' -56.2 NC_004812.1 + 41865 0.71 0.639603
Target:  5'- gCGCACCUCCCCcggcucCCGGCG-UCgCUg -3'
miRNA:   3'- -GUGUGGAGGGGaaa---GGUCGCaAGgGG- -5'
21482 3' -56.2 NC_004812.1 + 756 0.71 0.639603
Target:  5'- gCGCGCCUCgCCUc-CCGGCGccgcgggCCCCu -3'
miRNA:   3'- -GUGUGGAGgGGAaaGGUCGCaa-----GGGG- -5'
21482 3' -56.2 NC_004812.1 + 126264 0.71 0.639603
Target:  5'- gCGCGCCUCgCCUc-CCGGCGccgcgggCCCCu -3'
miRNA:   3'- -GUGUGGAGgGGAaaGGUCGCaa-----GGGG- -5'
21482 3' -56.2 NC_004812.1 + 142999 0.71 0.639603
Target:  5'- aACGCCagccuguuUCCCCUgagUCUGGUggaGUUCCCCc -3'
miRNA:   3'- gUGUGG--------AGGGGAa--AGGUCG---CAAGGGG- -5'
21482 3' -56.2 NC_004812.1 + 92467 0.71 0.649763
Target:  5'- cCGCGCCgccgUCCCCgaucgcgUCC-GCGUccUCCCCc -3'
miRNA:   3'- -GUGUGG----AGGGGaa-----AGGuCGCA--AGGGG- -5'
21482 3' -56.2 NC_004812.1 + 71663 0.71 0.653824
Target:  5'- cCACGCCUCCCCcagccacucgacCCGGCGg--CCCg -3'
miRNA:   3'- -GUGUGGAGGGGaaa---------GGUCGCaagGGG- -5'
21482 3' -56.2 NC_004812.1 + 32260 0.71 0.659909
Target:  5'- aCACGuCCUCCCgg-UCCgcGGCGUcCCCCc -3'
miRNA:   3'- -GUGU-GGAGGGgaaAGG--UCGCAaGGGG- -5'
21482 3' -56.2 NC_004812.1 + 31932 0.71 0.669022
Target:  5'- cCGCGCCgcucgcUCCCCggggCCAGCGUcaggacgUCgCCCa -3'
miRNA:   3'- -GUGUGG------AGGGGaaa-GGUCGCA-------AG-GGG- -5'
21482 3' -56.2 NC_004812.1 + 154242 0.71 0.670033
Target:  5'- cCACACCcgucccgCCUCUcUCCGGCGgggacgcgCCCCc -3'
miRNA:   3'- -GUGUGGa------GGGGAaAGGUCGCaa------GGGG- -5'
21482 3' -56.2 NC_004812.1 + 123341 0.71 0.670033
Target:  5'- cCACACCcgucccgCCUCUcUCCGGCGgggacgcgCCCCc -3'
miRNA:   3'- -GUGUGGa------GGGGAaAGGUCGCaa------GGGG- -5'
21482 3' -56.2 NC_004812.1 + 115849 0.71 0.670033
Target:  5'- -gUACCUCCCCUccCCcGCGccCCCCu -3'
miRNA:   3'- guGUGGAGGGGAaaGGuCGCaaGGGG- -5'
21482 3' -56.2 NC_004812.1 + 45962 0.71 0.670033
Target:  5'- gACcCCUCCCCg--CCcGCGUcuccgCCCCg -3'
miRNA:   3'- gUGuGGAGGGGaaaGGuCGCAa----GGGG- -5'
21482 3' -56.2 NC_004812.1 + 133511 0.71 0.680127
Target:  5'- uCGC-CCUCCCCUccCCcGCGcaCCCCu -3'
miRNA:   3'- -GUGuGGAGGGGAaaGGuCGCaaGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.