miRNA display CGI


Results 1 - 20 of 233 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21482 3' -56.2 NC_004812.1 + 70625 1.11 0.002333
Target:  5'- cCACACCUCCCCUUUCCAGCGUUCCCCc -3'
miRNA:   3'- -GUGUGGAGGGGAAAGGUCGCAAGGGG- -5'
21482 3' -56.2 NC_004812.1 + 11230 0.8 0.231633
Target:  5'- aCGCAUCUCCCCcgccgUUCCGGUGUUCgUCCa -3'
miRNA:   3'- -GUGUGGAGGGGa----AAGGUCGCAAG-GGG- -5'
21482 3' -56.2 NC_004812.1 + 130183 0.77 0.359458
Target:  5'- gCGCGCCUCgUCCaccUCCGGCGcgCCCCa -3'
miRNA:   3'- -GUGUGGAG-GGGaa-AGGUCGCaaGGGG- -5'
21482 3' -56.2 NC_004812.1 + 116660 0.77 0.359458
Target:  5'- cCACGCCUCUCCgucucucgggUUUCCGGCacgCCCCa -3'
miRNA:   3'- -GUGUGGAGGGG----------AAAGGUCGcaaGGGG- -5'
21482 3' -56.2 NC_004812.1 + 4675 0.77 0.359458
Target:  5'- gCGCGCCUCgUCCaccUCCGGCGcgCCCCa -3'
miRNA:   3'- -GUGUGGAG-GGGaa-AGGUCGCaaGGGG- -5'
21482 3' -56.2 NC_004812.1 + 47641 0.75 0.444132
Target:  5'- -cCGCCUCCCCaccgggUCCcGCGaUCCCCc -3'
miRNA:   3'- guGUGGAGGGGaa----AGGuCGCaAGGGG- -5'
21482 3' -56.2 NC_004812.1 + 111515 0.74 0.49999
Target:  5'- uCACGCC-CCCCgcccgccggCCGGCuUUCCCCc -3'
miRNA:   3'- -GUGUGGaGGGGaaa------GGUCGcAAGGGG- -5'
21482 3' -56.2 NC_004812.1 + 74086 0.73 0.529067
Target:  5'- gGCGCCUCCCggggCCucGCGggCCCCg -3'
miRNA:   3'- gUGUGGAGGGgaaaGGu-CGCaaGGGG- -5'
21482 3' -56.2 NC_004812.1 + 57767 0.73 0.529067
Target:  5'- aACACCUCCCCgccgUCC-GCGccgCCCg -3'
miRNA:   3'- gUGUGGAGGGGaa--AGGuCGCaa-GGGg -5'
21482 3' -56.2 NC_004812.1 + 54714 0.73 0.5389
Target:  5'- cCGCGCCUCggggcgCCCUagcCCGGCGcgCCCCc -3'
miRNA:   3'- -GUGUGGAG------GGGAaa-GGUCGCaaGGGG- -5'
21482 3' -56.2 NC_004812.1 + 73367 0.73 0.548794
Target:  5'- gACGCCUCgCCC---CCGGUGUcCCCCa -3'
miRNA:   3'- gUGUGGAG-GGGaaaGGUCGCAaGGGG- -5'
21482 3' -56.2 NC_004812.1 + 88130 0.73 0.548794
Target:  5'- -uCGCCUCCCU----CAGCGUUCCCg -3'
miRNA:   3'- guGUGGAGGGGaaagGUCGCAAGGGg -5'
21482 3' -56.2 NC_004812.1 + 32715 0.73 0.558744
Target:  5'- aGCACCUCCC----CCAGCGcgUCCCg -3'
miRNA:   3'- gUGUGGAGGGgaaaGGUCGCa-AGGGg -5'
21482 3' -56.2 NC_004812.1 + 78435 0.73 0.558744
Target:  5'- gCGCACCUCCCgCUcaUCCAGCccgUCCUg -3'
miRNA:   3'- -GUGUGGAGGG-GAa-AGGUCGca-AGGGg -5'
21482 3' -56.2 NC_004812.1 + 148676 0.73 0.568744
Target:  5'- aCGCGCC-CCCCggccgcgCCGGCGcgCCCg -3'
miRNA:   3'- -GUGUGGaGGGGaaa----GGUCGCaaGGGg -5'
21482 3' -56.2 NC_004812.1 + 14508 0.73 0.568744
Target:  5'- aCGCACgUgCUCUUgcccgagCCGGCGUUCCCg -3'
miRNA:   3'- -GUGUGgAgGGGAAa------GGUCGCAAGGGg -5'
21482 3' -56.2 NC_004812.1 + 129616 0.72 0.588871
Target:  5'- gGCcguCCUCCCCggcgCCGGCGgggCCCUc -3'
miRNA:   3'- gUGu--GGAGGGGaaa-GGUCGCaa-GGGG- -5'
21482 3' -56.2 NC_004812.1 + 4107 0.72 0.588871
Target:  5'- gGCcguCCUCCCCggcgCCGGCGgggCCCUc -3'
miRNA:   3'- gUGu--GGAGGGGaaa-GGUCGCaa-GGGG- -5'
21482 3' -56.2 NC_004812.1 + 145181 0.72 0.598983
Target:  5'- gGCACCcUCCCg--CCGGCGguaaCCCCg -3'
miRNA:   3'- gUGUGGaGGGGaaaGGUCGCaa--GGGG- -5'
21482 3' -56.2 NC_004812.1 + 106981 0.72 0.598983
Target:  5'- gGCGCCUCCCCcucCCGccccGCGggcgCCCCu -3'
miRNA:   3'- gUGUGGAGGGGaaaGGU----CGCaa--GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.