miRNA display CGI


Results 1 - 20 of 233 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21482 3' -56.2 NC_004812.1 + 89307 0.66 0.890569
Target:  5'- -uCGCCUCCCCgagCCcGCucccgCCCCc -3'
miRNA:   3'- guGUGGAGGGGaaaGGuCGcaa--GGGG- -5'
21482 3' -56.2 NC_004812.1 + 2609 0.66 0.897147
Target:  5'- gGCACCggacUCUCCgcgCCGGCcccgCCCCg -3'
miRNA:   3'- gUGUGG----AGGGGaaaGGUCGcaa-GGGG- -5'
21482 3' -56.2 NC_004812.1 + 146082 0.66 0.907197
Target:  5'- uCACGCCgagacuuucccgcCCCCgccUCCGGCuucucUCCCCu -3'
miRNA:   3'- -GUGUGGa------------GGGGaa-AGGUCGca---AGGGG- -5'
21482 3' -56.2 NC_004812.1 + 8097 0.66 0.897147
Target:  5'- cCGCGCCgcccCCCCUcccCCGGCccggaaCCCCg -3'
miRNA:   3'- -GUGUGGa---GGGGAaa-GGUCGcaa---GGGG- -5'
21482 3' -56.2 NC_004812.1 + 104303 0.66 0.897147
Target:  5'- cCGC-CCaCCCCgacgCCGGCcGggCCCCg -3'
miRNA:   3'- -GUGuGGaGGGGaaa-GGUCG-CaaGGGG- -5'
21482 3' -56.2 NC_004812.1 + 18289 0.66 0.897147
Target:  5'- aGgGCCUCCuCCgcgCCGGCGccaCCCu -3'
miRNA:   3'- gUgUGGAGG-GGaaaGGUCGCaagGGG- -5'
21482 3' -56.2 NC_004812.1 + 154570 0.66 0.901617
Target:  5'- cCGCGCC-CCCCgccgCCgaccgaggcccgccGGCGUcggcgCCCCg -3'
miRNA:   3'- -GUGUGGaGGGGaaa-GG--------------UCGCAa----GGGG- -5'
21482 3' -56.2 NC_004812.1 + 123764 0.66 0.890569
Target:  5'- uGCACCcgUCCCCccgaCgGGCGgagcgCCCCg -3'
miRNA:   3'- gUGUGG--AGGGGaaa-GgUCGCaa---GGGG- -5'
21482 3' -56.2 NC_004812.1 + 139379 0.66 0.889899
Target:  5'- cCGCACCcuccgugUCCCCcgcUCCAGCGgcaCCg -3'
miRNA:   3'- -GUGUGG-------AGGGGaa-AGGUCGCaagGGg -5'
21482 3' -56.2 NC_004812.1 + 132538 0.66 0.914926
Target:  5'- gCACAUUUCCCCcggggacgcgaggggCGGCGUcCCCCg -3'
miRNA:   3'- -GUGUGGAGGGGaaag-----------GUCGCAaGGGG- -5'
21482 3' -56.2 NC_004812.1 + 21858 0.66 0.913763
Target:  5'- aCACACguugUUCCCCgcggccaggcgcgccUCCAGC--UCCCCg -3'
miRNA:   3'- -GUGUG----GAGGGGaa-------------AGGUCGcaAGGGG- -5'
21482 3' -56.2 NC_004812.1 + 145547 0.66 0.897147
Target:  5'- -uCGCCUCCCCggcacggacCCGGC---CCCCa -3'
miRNA:   3'- guGUGGAGGGGaaa------GGUCGcaaGGGG- -5'
21482 3' -56.2 NC_004812.1 + 75980 0.66 0.921157
Target:  5'- gACuCCccgCCCCUcUCCAccGCGgaCCCCc -3'
miRNA:   3'- gUGuGGa--GGGGAaAGGU--CGCaaGGGG- -5'
21482 3' -56.2 NC_004812.1 + 135947 0.66 0.903498
Target:  5'- -cCACCUCCUCgcucucCCAcGCGgcgUCCUCg -3'
miRNA:   3'- guGUGGAGGGGaaa---GGU-CGCa--AGGGG- -5'
21482 3' -56.2 NC_004812.1 + 46761 0.66 0.903498
Target:  5'- cCACugCcgCCUCg--CCAGCGgagaucucgCCCCg -3'
miRNA:   3'- -GUGugGa-GGGGaaaGGUCGCaa-------GGGG- -5'
21482 3' -56.2 NC_004812.1 + 144930 0.66 0.905973
Target:  5'- cCGCAgCUgCCCgagugccgcucgCCGGCGgacgCCCCg -3'
miRNA:   3'- -GUGUgGAgGGGaaa---------GGUCGCaa--GGGG- -5'
21482 3' -56.2 NC_004812.1 + 18587 0.66 0.897147
Target:  5'- -cCGCCgcaCCCgcgCCGGCGgcgUCCCg -3'
miRNA:   3'- guGUGGag-GGGaaaGGUCGCa--AGGGg -5'
21482 3' -56.2 NC_004812.1 + 8779 0.66 0.890569
Target:  5'- -cCACCcCCCCcacUCCGGCcuccUCCCCc -3'
miRNA:   3'- guGUGGaGGGGaa-AGGUCGca--AGGGG- -5'
21482 3' -56.2 NC_004812.1 + 21571 0.66 0.909617
Target:  5'- aGCAgCUCCCCcagaCgCAGCGUccgcacccgCCCCa -3'
miRNA:   3'- gUGUgGAGGGGaaa-G-GUCGCAa--------GGGG- -5'
21482 3' -56.2 NC_004812.1 + 689 0.66 0.897147
Target:  5'- aGCGCgUCCCCgggUCCGGag--CUCCg -3'
miRNA:   3'- gUGUGgAGGGGaa-AGGUCgcaaGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.