Results 1 - 20 of 233 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21482 | 3' | -56.2 | NC_004812.1 | + | 113108 | 0.71 | 0.680127 |
Target: 5'- cCACGCC-CCCCUcgCUgauggcgcuggcGGuCGUUCCCCc -3' miRNA: 3'- -GUGUGGaGGGGAaaGG------------UC-GCAAGGGG- -5' |
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21482 | 3' | -56.2 | NC_004812.1 | + | 41865 | 0.71 | 0.639603 |
Target: 5'- gCGCACCUCCCCcggcucCCGGCG-UCgCUg -3' miRNA: 3'- -GUGUGGAGGGGaaa---GGUCGCaAGgGG- -5' |
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21482 | 3' | -56.2 | NC_004812.1 | + | 142999 | 0.71 | 0.639603 |
Target: 5'- aACGCCagccuguuUCCCCUgagUCUGGUggaGUUCCCCc -3' miRNA: 3'- gUGUGG--------AGGGGAa--AGGUCG---CAAGGGG- -5' |
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21482 | 3' | -56.2 | NC_004812.1 | + | 126264 | 0.71 | 0.639603 |
Target: 5'- gCGCGCCUCgCCUc-CCGGCGccgcgggCCCCu -3' miRNA: 3'- -GUGUGGAGgGGAaaGGUCGCaa-----GGGG- -5' |
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21482 | 3' | -56.2 | NC_004812.1 | + | 32260 | 0.71 | 0.659909 |
Target: 5'- aCACGuCCUCCCgg-UCCgcGGCGUcCCCCc -3' miRNA: 3'- -GUGU-GGAGGGgaaAGG--UCGCAaGGGG- -5' |
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21482 | 3' | -56.2 | NC_004812.1 | + | 31932 | 0.71 | 0.669022 |
Target: 5'- cCGCGCCgcucgcUCCCCggggCCAGCGUcaggacgUCgCCCa -3' miRNA: 3'- -GUGUGG------AGGGGaaa-GGUCGCA-------AG-GGG- -5' |
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21482 | 3' | -56.2 | NC_004812.1 | + | 45962 | 0.71 | 0.670033 |
Target: 5'- gACcCCUCCCCg--CCcGCGUcuccgCCCCg -3' miRNA: 3'- gUGuGGAGGGGaaaGGuCGCAa----GGGG- -5' |
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21482 | 3' | -56.2 | NC_004812.1 | + | 115849 | 0.71 | 0.670033 |
Target: 5'- -gUACCUCCCCUccCCcGCGccCCCCu -3' miRNA: 3'- guGUGGAGGGGAaaGGuCGCaaGGGG- -5' |
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21482 | 3' | -56.2 | NC_004812.1 | + | 123341 | 0.71 | 0.670033 |
Target: 5'- cCACACCcgucccgCCUCUcUCCGGCGgggacgcgCCCCc -3' miRNA: 3'- -GUGUGGa------GGGGAaAGGUCGCaa------GGGG- -5' |
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21482 | 3' | -56.2 | NC_004812.1 | + | 55774 | 0.72 | 0.629438 |
Target: 5'- uCGC-CCUCCCCggcgUCgCGGCGcccgCCCCc -3' miRNA: 3'- -GUGuGGAGGGGaa--AG-GUCGCaa--GGGG- -5' |
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21482 | 3' | -56.2 | NC_004812.1 | + | 121065 | 0.72 | 0.629438 |
Target: 5'- aGCcCCUCCCCgcgCgGGCGUcccgCCCCc -3' miRNA: 3'- gUGuGGAGGGGaaaGgUCGCAa---GGGG- -5' |
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21482 | 3' | -56.2 | NC_004812.1 | + | 127102 | 0.72 | 0.619274 |
Target: 5'- gCACGgCUCCCCgccUCCGG-GcgCCCCg -3' miRNA: 3'- -GUGUgGAGGGGaa-AGGUCgCaaGGGG- -5' |
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21482 | 3' | -56.2 | NC_004812.1 | + | 130183 | 0.77 | 0.359458 |
Target: 5'- gCGCGCCUCgUCCaccUCCGGCGcgCCCCa -3' miRNA: 3'- -GUGUGGAG-GGGaa-AGGUCGCaaGGGG- -5' |
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21482 | 3' | -56.2 | NC_004812.1 | + | 47641 | 0.75 | 0.444132 |
Target: 5'- -cCGCCUCCCCaccgggUCCcGCGaUCCCCc -3' miRNA: 3'- guGUGGAGGGGaa----AGGuCGCaAGGGG- -5' |
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21482 | 3' | -56.2 | NC_004812.1 | + | 57767 | 0.73 | 0.529067 |
Target: 5'- aACACCUCCCCgccgUCC-GCGccgCCCg -3' miRNA: 3'- gUGUGGAGGGGaa--AGGuCGCaa-GGGg -5' |
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21482 | 3' | -56.2 | NC_004812.1 | + | 32715 | 0.73 | 0.558744 |
Target: 5'- aGCACCUCCC----CCAGCGcgUCCCg -3' miRNA: 3'- gUGUGGAGGGgaaaGGUCGCa-AGGGg -5' |
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21482 | 3' | -56.2 | NC_004812.1 | + | 14508 | 0.73 | 0.568744 |
Target: 5'- aCGCACgUgCUCUUgcccgagCCGGCGUUCCCg -3' miRNA: 3'- -GUGUGgAgGGGAAa------GGUCGCAAGGGg -5' |
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21482 | 3' | -56.2 | NC_004812.1 | + | 129616 | 0.72 | 0.588871 |
Target: 5'- gGCcguCCUCCCCggcgCCGGCGgggCCCUc -3' miRNA: 3'- gUGu--GGAGGGGaaa-GGUCGCaa-GGGG- -5' |
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21482 | 3' | -56.2 | NC_004812.1 | + | 106981 | 0.72 | 0.598983 |
Target: 5'- gGCGCCUCCCCcucCCGccccGCGggcgCCCCu -3' miRNA: 3'- gUGUGGAGGGGaaaGGU----CGCaa--GGGG- -5' |
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21482 | 3' | -56.2 | NC_004812.1 | + | 95396 | 0.72 | 0.60912 |
Target: 5'- aCACACCccagCCCCcccgcCCAuCGUUCCCCc -3' miRNA: 3'- -GUGUGGa---GGGGaaa--GGUcGCAAGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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