miRNA display CGI


Results 1 - 20 of 233 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21482 3' -56.2 NC_004812.1 + 282 0.66 0.915504
Target:  5'- gCGCGCgCUCCgCCgccgUCCGGcCGcgCCCg -3'
miRNA:   3'- -GUGUG-GAGG-GGaa--AGGUC-GCaaGGGg -5'
21482 3' -56.2 NC_004812.1 + 434 0.68 0.830285
Target:  5'- ---cCCUCCCC-UUCCucGCGcggCCCCg -3'
miRNA:   3'- guguGGAGGGGaAAGGu-CGCaa-GGGG- -5'
21482 3' -56.2 NC_004812.1 + 689 0.66 0.897147
Target:  5'- aGCGCgUCCCCgggUCCGGag--CUCCg -3'
miRNA:   3'- gUGUGgAGGGGaa-AGGUCgcaaGGGG- -5'
21482 3' -56.2 NC_004812.1 + 756 0.71 0.639603
Target:  5'- gCGCGCCUCgCCUc-CCGGCGccgcgggCCCCu -3'
miRNA:   3'- -GUGUGGAGgGGAaaGGUCGCaa-----GGGG- -5'
21482 3' -56.2 NC_004812.1 + 1337 0.7 0.710139
Target:  5'- cCGCcCCUCCCCggUuuGGCGUccgccgcgCCCCc -3'
miRNA:   3'- -GUGuGGAGGGGaaAggUCGCAa-------GGGG- -5'
21482 3' -56.2 NC_004812.1 + 1594 0.72 0.619274
Target:  5'- gCACGgCUCCCCgccUCCGG-GcgCCCCg -3'
miRNA:   3'- -GUGUgGAGGGGaa-AGGUCgCaaGGGG- -5'
21482 3' -56.2 NC_004812.1 + 1843 0.68 0.804565
Target:  5'- ---uCCUCCCCUcUCCccGCGcagCCCCg -3'
miRNA:   3'- guguGGAGGGGAaAGGu-CGCaa-GGGG- -5'
21482 3' -56.2 NC_004812.1 + 1887 0.67 0.846556
Target:  5'- gGCGCCcgggCCCCg--CCcGCGgcaCCCCg -3'
miRNA:   3'- gUGUGGa---GGGGaaaGGuCGCaa-GGGG- -5'
21482 3' -56.2 NC_004812.1 + 2609 0.66 0.897147
Target:  5'- gGCACCggacUCUCCgcgCCGGCcccgCCCCg -3'
miRNA:   3'- gUGUGG----AGGGGaaaGGUCGcaa-GGGG- -5'
21482 3' -56.2 NC_004812.1 + 3411 0.7 0.720024
Target:  5'- -cCGCCUCCCC---CCGGCGgcCCuCCg -3'
miRNA:   3'- guGUGGAGGGGaaaGGUCGCaaGG-GG- -5'
21482 3' -56.2 NC_004812.1 + 3441 0.67 0.883767
Target:  5'- cCGCGCC-CCCCguggUCCccGUGgccCCCCg -3'
miRNA:   3'- -GUGUGGaGGGGaa--AGGu-CGCaa-GGGG- -5'
21482 3' -56.2 NC_004812.1 + 3953 0.67 0.846556
Target:  5'- -cCGCCUCCCggaggcCCGGCGcccCCCCg -3'
miRNA:   3'- guGUGGAGGGgaaa--GGUCGCaa-GGGG- -5'
21482 3' -56.2 NC_004812.1 + 4107 0.72 0.588871
Target:  5'- gGCcguCCUCCCCggcgCCGGCGgggCCCUc -3'
miRNA:   3'- gUGu--GGAGGGGaaa-GGUCGCaa-GGGG- -5'
21482 3' -56.2 NC_004812.1 + 4675 0.77 0.359458
Target:  5'- gCGCGCCUCgUCCaccUCCGGCGcgCCCCa -3'
miRNA:   3'- -GUGUGGAG-GGGaa-AGGUCGCaaGGGG- -5'
21482 3' -56.2 NC_004812.1 + 5754 0.71 0.680127
Target:  5'- aCGCGCCUCCggccccucuCCUcUCCccguccgcucgcGGCGUUCCUCc -3'
miRNA:   3'- -GUGUGGAGG---------GGAaAGG------------UCGCAAGGGG- -5'
21482 3' -56.2 NC_004812.1 + 5929 0.67 0.871701
Target:  5'- gACGCCgCCCCggagcgcgggggcgaCCGGCGgcuccgCCCCg -3'
miRNA:   3'- gUGUGGaGGGGaaa------------GGUCGCaa----GGGG- -5'
21482 3' -56.2 NC_004812.1 + 6221 0.68 0.813303
Target:  5'- gACGCCgCCCCUgccgCC-GCGg-CCCCg -3'
miRNA:   3'- gUGUGGaGGGGAaa--GGuCGCaaGGGG- -5'
21482 3' -56.2 NC_004812.1 + 6846 0.67 0.853631
Target:  5'- cCACACCcgccgggccuccuUCCCC-UUCCcGCacuguUUCCCCg -3'
miRNA:   3'- -GUGUGG-------------AGGGGaAAGGuCGc----AAGGGG- -5'
21482 3' -56.2 NC_004812.1 + 7029 0.66 0.914926
Target:  5'- gCACAUUUCCCCcggggacgcgaggggCGGCGUcCCCCg -3'
miRNA:   3'- -GUGUGGAGGGGaaag-----------GUCGCAaGGGG- -5'
21482 3' -56.2 NC_004812.1 + 7450 0.68 0.821879
Target:  5'- gACGCCgCCCCUcgccUCCGcggggaccGCGcgCCCCg -3'
miRNA:   3'- gUGUGGaGGGGAa---AGGU--------CGCaaGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.