miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21488 3' -55 NC_004812.1 + 67601 1.08 0.004788
Target:  5'- uCUUGAAUCGCCGAAGCGGGUGGUCCGc -3'
miRNA:   3'- -GAACUUAGCGGCUUCGCCCACCAGGC- -5'
21488 3' -55 NC_004812.1 + 988 0.79 0.312347
Target:  5'- --gGggUCGCCGggGUccuGGG-GGUCCGg -3'
miRNA:   3'- gaaCuuAGCGGCuuCG---CCCaCCAGGC- -5'
21488 3' -55 NC_004812.1 + 910 0.77 0.433237
Target:  5'- --gGggUCGCCGggGguccUGGG-GGUCCGg -3'
miRNA:   3'- gaaCuuAGCGGCuuC----GCCCaCCAGGC- -5'
21488 3' -55 NC_004812.1 + 884 0.77 0.433237
Target:  5'- --gGggUCGCCGggGguccUGGG-GGUCCGg -3'
miRNA:   3'- gaaCuuAGCGGCuuC----GCCCaCCAGGC- -5'
21488 3' -55 NC_004812.1 + 31889 0.77 0.433237
Target:  5'- --gGggUCGCCGggGguccUGGG-GGUCCGg -3'
miRNA:   3'- gaaCuuAGCGGCuuC----GCCCaCCAGGC- -5'
21488 3' -55 NC_004812.1 + 31863 0.77 0.433237
Target:  5'- --gGggUCGCCGggGguccUGGG-GGUCCGg -3'
miRNA:   3'- gaaCuuAGCGGCuuC----GCCCaCCAGGC- -5'
21488 3' -55 NC_004812.1 + 31837 0.77 0.433237
Target:  5'- --gGggUCGCCGggGguccUGGG-GGUCCGg -3'
miRNA:   3'- gaaCuuAGCGGCuuC----GCCCaCCAGGC- -5'
21488 3' -55 NC_004812.1 + 31811 0.77 0.433237
Target:  5'- --gGggUCGCCGggGguccUGGG-GGUCCGg -3'
miRNA:   3'- gaaCuuAGCGGCuuC----GCCCaCCAGGC- -5'
21488 3' -55 NC_004812.1 + 31785 0.77 0.433237
Target:  5'- --gGggUCGCCGggGguccUGGG-GGUCCGg -3'
miRNA:   3'- gaaCuuAGCGGCuuC----GCCCaCCAGGC- -5'
21488 3' -55 NC_004812.1 + 936 0.77 0.433237
Target:  5'- --gGggUCGCCGggGguccUGGG-GGUCCGg -3'
miRNA:   3'- gaaCuuAGCGGCuuC----GCCCaCCAGGC- -5'
21488 3' -55 NC_004812.1 + 1269 0.75 0.537228
Target:  5'- gUUGGucCGCCGGccgcgGGCGGGcGGUCCGa -3'
miRNA:   3'- gAACUuaGCGGCU-----UCGCCCaCCAGGC- -5'
21488 3' -55 NC_004812.1 + 32170 0.75 0.537228
Target:  5'- gUUGGucCGCCGGccgcgGGCGGGcGGUCCGa -3'
miRNA:   3'- gAACUuaGCGGCU-----UCGCCCaCCAGGC- -5'
21488 3' -55 NC_004812.1 + 152991 0.74 0.557138
Target:  5'- -cUGAG-CGCCGggGCGGGccugGGUCa- -3'
miRNA:   3'- gaACUUaGCGGCuuCGCCCa---CCAGgc -5'
21488 3' -55 NC_004812.1 + 122090 0.74 0.557138
Target:  5'- -cUGAG-CGCCGggGCGGGccugGGUCa- -3'
miRNA:   3'- gaACUUaGCGGCuuCGCCCa---CCAGgc -5'
21488 3' -55 NC_004812.1 + 146893 0.74 0.587373
Target:  5'- --aGAuucaugCGCgGggGCGGGcGGUCCGg -3'
miRNA:   3'- gaaCUua----GCGgCuuCGCCCaCCAGGC- -5'
21488 3' -55 NC_004812.1 + 85661 0.73 0.628103
Target:  5'- -cUGG--UGCCGggGCGGGUugcGGUCCc -3'
miRNA:   3'- gaACUuaGCGGCuuCGCCCA---CCAGGc -5'
21488 3' -55 NC_004812.1 + 148097 0.72 0.68912
Target:  5'- --cGGAUCGCCgGggGCGGaGUGaGUCgGu -3'
miRNA:   3'- gaaCUUAGCGG-CuuCGCC-CAC-CAGgC- -5'
21488 3' -55 NC_004812.1 + 72082 0.72 0.703182
Target:  5'- -cUGuuUCGCCGcccccgagcucguuuGGGCGGGggcuggGGUCCGg -3'
miRNA:   3'- gaACuuAGCGGC---------------UUCGCCCa-----CCAGGC- -5'
21488 3' -55 NC_004812.1 + 93525 0.71 0.719108
Target:  5'- --cGAAg-GCCGAGGCGGGgcgcgGGUgCGg -3'
miRNA:   3'- gaaCUUagCGGCUUCGCCCa----CCAgGC- -5'
21488 3' -55 NC_004812.1 + 18425 0.71 0.719108
Target:  5'- -cUGggUCGCgCGcGGCGGGggccGcGUCCGg -3'
miRNA:   3'- gaACuuAGCG-GCuUCGCCCa---C-CAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.