miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21488 3' -55 NC_004812.1 + 98673 0.69 0.84629
Target:  5'- --gGggUCgaGCCGggGCGGGcgcGGUCg- -3'
miRNA:   3'- gaaCuuAG--CGGCuuCGCCCa--CCAGgc -5'
21488 3' -55 NC_004812.1 + 122046 0.71 0.758011
Target:  5'- aCUUGGG-CGCCG-GGCGGGacuUGGgcgCCGg -3'
miRNA:   3'- -GAACUUaGCGGCuUCGCCC---ACCa--GGC- -5'
21488 3' -55 NC_004812.1 + 2232 0.71 0.758011
Target:  5'- ------cCGCCGAGGUGGG-GGUCuCGg -3'
miRNA:   3'- gaacuuaGCGGCUUCGCCCaCCAG-GC- -5'
21488 3' -55 NC_004812.1 + 54655 0.7 0.765597
Target:  5'- --gGggUCGCCGccGCGGGgcccagcggccgGGUCgCGg -3'
miRNA:   3'- gaaCuuAGCGGCuuCGCCCa-----------CCAG-GC- -5'
21488 3' -55 NC_004812.1 + 962 0.7 0.767483
Target:  5'- --gGggUCGCCGggGguccUGGG-GGUCCn -3'
miRNA:   3'- gaaCuuAGCGGCuuC----GCCCaCCAGGc -5'
21488 3' -55 NC_004812.1 + 5090 0.7 0.776834
Target:  5'- --gGggUCcgGCCGGggaGGCGGGggagucuggGGUCCGg -3'
miRNA:   3'- gaaCuuAG--CGGCU---UCGCCCa--------CCAGGC- -5'
21488 3' -55 NC_004812.1 + 130480 0.69 0.821486
Target:  5'- --cGGcggCGgCGAGGCGGGgggcgacgGGUCCGg -3'
miRNA:   3'- gaaCUua-GCgGCUUCGCCCa-------CCAGGC- -5'
21488 3' -55 NC_004812.1 + 19595 0.69 0.833266
Target:  5'- -cUGGAUCGCCGccAGGCGGGcccacgccagccgcGcGUCCGg -3'
miRNA:   3'- gaACUUAGCGGC--UUCGCCCa-------------C-CAGGC- -5'
21488 3' -55 NC_004812.1 + 62143 0.69 0.838206
Target:  5'- --cGGAUCGgCGgcGCGGGcGGccUCCGg -3'
miRNA:   3'- gaaCUUAGCgGCuuCGCCCaCC--AGGC- -5'
21488 3' -55 NC_004812.1 + 122010 0.71 0.758011
Target:  5'- aCUUGGG-CGCCG-GGCGGGacuUGGgcgCCGg -3'
miRNA:   3'- -GAACUUaGCGGCuUCGCCC---ACCa--GGC- -5'
21488 3' -55 NC_004812.1 + 85158 0.71 0.748429
Target:  5'- -cUGGAcgcgcUCGCCGAGugccuGCGGGccaUGGUCCa -3'
miRNA:   3'- gaACUU-----AGCGGCUU-----CGCCC---ACCAGGc -5'
21488 3' -55 NC_004812.1 + 84427 0.71 0.738744
Target:  5'- --aGAGcUCGCgCGAAGgGGGUuccgGGUCCGc -3'
miRNA:   3'- gaaCUU-AGCG-GCUUCgCCCA----CCAGGC- -5'
21488 3' -55 NC_004812.1 + 884 0.77 0.433237
Target:  5'- --gGggUCGCCGggGguccUGGG-GGUCCGg -3'
miRNA:   3'- gaaCuuAGCGGCuuC----GCCCaCCAGGC- -5'
21488 3' -55 NC_004812.1 + 910 0.77 0.433237
Target:  5'- --gGggUCGCCGggGguccUGGG-GGUCCGg -3'
miRNA:   3'- gaaCuuAGCGGCuuC----GCCCaCCAGGC- -5'
21488 3' -55 NC_004812.1 + 936 0.77 0.433237
Target:  5'- --gGggUCGCCGggGguccUGGG-GGUCCGg -3'
miRNA:   3'- gaaCuuAGCGGCuuC----GCCCaCCAGGC- -5'
21488 3' -55 NC_004812.1 + 1269 0.75 0.537228
Target:  5'- gUUGGucCGCCGGccgcgGGCGGGcGGUCCGa -3'
miRNA:   3'- gAACUuaGCGGCU-----UCGCCCaCCAGGC- -5'
21488 3' -55 NC_004812.1 + 122090 0.74 0.557138
Target:  5'- -cUGAG-CGCCGggGCGGGccugGGUCa- -3'
miRNA:   3'- gaACUUaGCGGCuuCGCCCa---CCAGgc -5'
21488 3' -55 NC_004812.1 + 148097 0.72 0.68912
Target:  5'- --cGGAUCGCCgGggGCGGaGUGaGUCgGu -3'
miRNA:   3'- gaaCUUAGCGG-CuuCGCC-CAC-CAGgC- -5'
21488 3' -55 NC_004812.1 + 72082 0.72 0.703182
Target:  5'- -cUGuuUCGCCGcccccgagcucguuuGGGCGGGggcuggGGUCCGg -3'
miRNA:   3'- gaACuuAGCGGC---------------UUCGCCCa-----CCAGGC- -5'
21488 3' -55 NC_004812.1 + 18160 0.71 0.727985
Target:  5'- --cGAAaCGCCGccgucggGAGCGGGUccccgcGGUCCGa -3'
miRNA:   3'- gaaCUUaGCGGC-------UUCGCCCA------CCAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.