miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21488 3' -55 NC_004812.1 + 733 0.66 0.936826
Target:  5'- ---cGGUCGCCGgcGgGGGUGGgggCGg -3'
miRNA:   3'- gaacUUAGCGGCuuCgCCCACCag-GC- -5'
21488 3' -55 NC_004812.1 + 884 0.77 0.433237
Target:  5'- --gGggUCGCCGggGguccUGGG-GGUCCGg -3'
miRNA:   3'- gaaCuuAGCGGCuuC----GCCCaCCAGGC- -5'
21488 3' -55 NC_004812.1 + 910 0.77 0.433237
Target:  5'- --gGggUCGCCGggGguccUGGG-GGUCCGg -3'
miRNA:   3'- gaaCuuAGCGGCuuC----GCCCaCCAGGC- -5'
21488 3' -55 NC_004812.1 + 936 0.77 0.433237
Target:  5'- --gGggUCGCCGggGguccUGGG-GGUCCGg -3'
miRNA:   3'- gaaCuuAGCGGCuuC----GCCCaCCAGGC- -5'
21488 3' -55 NC_004812.1 + 962 0.7 0.767483
Target:  5'- --gGggUCGCCGggGguccUGGG-GGUCCn -3'
miRNA:   3'- gaaCuuAGCGGCuuC----GCCCaCCAGGc -5'
21488 3' -55 NC_004812.1 + 988 0.79 0.312347
Target:  5'- --gGggUCGCCGggGUccuGGG-GGUCCGg -3'
miRNA:   3'- gaaCuuAGCGGCuuCG---CCCaCCAGGC- -5'
21488 3' -55 NC_004812.1 + 1269 0.75 0.537228
Target:  5'- gUUGGucCGCCGGccgcgGGCGGGcGGUCCGa -3'
miRNA:   3'- gAACUuaGCGGCU-----UCGCCCaCCAGGC- -5'
21488 3' -55 NC_004812.1 + 2232 0.71 0.758011
Target:  5'- ------cCGCCGAGGUGGG-GGUCuCGg -3'
miRNA:   3'- gaacuuaGCGGCUUCGCCCaCCAG-GC- -5'
21488 3' -55 NC_004812.1 + 3319 0.68 0.883683
Target:  5'- --cGGcgCGCCaGGccucggggaagAGCGGGUGGUCgGu -3'
miRNA:   3'- gaaCUuaGCGG-CU-----------UCGCCCACCAGgC- -5'
21488 3' -55 NC_004812.1 + 4387 0.68 0.861111
Target:  5'- -----cUgGCCGAGGCgucgcccGGGUGGUCCc -3'
miRNA:   3'- gaacuuAgCGGCUUCG-------CCCACCAGGc -5'
21488 3' -55 NC_004812.1 + 4972 0.7 0.786058
Target:  5'- --cGGcggCGgCGAGGCGGGggcgacgGGUCCGg -3'
miRNA:   3'- gaaCUua-GCgGCUUCGCCCa------CCAGGC- -5'
21488 3' -55 NC_004812.1 + 5090 0.7 0.776834
Target:  5'- --gGggUCcgGCCGGggaGGCGGGggagucuggGGUCCGg -3'
miRNA:   3'- gaaCuuAG--CGGCU---UCGCCCa--------CCAGGC- -5'
21488 3' -55 NC_004812.1 + 7701 0.66 0.950294
Target:  5'- --gGGGgucgCGCCGAguccgcGGCGGG-GGUCUc -3'
miRNA:   3'- gaaCUUa---GCGGCU------UCGCCCaCCAGGc -5'
21488 3' -55 NC_004812.1 + 11310 0.66 0.936826
Target:  5'- --cGGggCGCCGcgGGGCGGG-GG-CCGg -3'
miRNA:   3'- gaaCUuaGCGGC--UUCGCCCaCCaGGC- -5'
21488 3' -55 NC_004812.1 + 13415 0.65 0.954321
Target:  5'- -gUGAcg-GCCGGAG-GGGUGG-CCGu -3'
miRNA:   3'- gaACUuagCGGCUUCgCCCACCaGGC- -5'
21488 3' -55 NC_004812.1 + 18160 0.71 0.727985
Target:  5'- --cGAAaCGCCGccgucggGAGCGGGUccccgcGGUCCGa -3'
miRNA:   3'- gaaCUUaGCGGC-------UUCGCCCA------CCAGGC- -5'
21488 3' -55 NC_004812.1 + 18425 0.71 0.719108
Target:  5'- -cUGggUCGCgCGcGGCGGGggccGcGUCCGg -3'
miRNA:   3'- gaACuuAGCG-GCuUCGCCCa---C-CAGGC- -5'
21488 3' -55 NC_004812.1 + 19595 0.69 0.833266
Target:  5'- -cUGGAUCGCCGccAGGCGGGcccacgccagccgcGcGUCCGg -3'
miRNA:   3'- gaACUUAGCGGC--UUCGCCCa-------------C-CAGGC- -5'
21488 3' -55 NC_004812.1 + 19649 0.67 0.92123
Target:  5'- -gUGGGcCGCCaGGGCGaGGgGGUCCGu -3'
miRNA:   3'- gaACUUaGCGGcUUCGC-CCaCCAGGC- -5'
21488 3' -55 NC_004812.1 + 21142 0.71 0.728968
Target:  5'- -gUGGcgUGCCGcGGCGGG-GGUCuCGg -3'
miRNA:   3'- gaACUuaGCGGCuUCGCCCaCCAG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.