miRNA display CGI


Results 21 - 40 of 420 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21488 5' -61.6 NC_004812.1 + 19699 0.75 0.201918
Target:  5'- gCGCGGCGGCGCgCgGCgCCGgCGACCGg -3'
miRNA:   3'- -GUGCCGUCGCG-GaCGaGGUgGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 29599 0.75 0.211817
Target:  5'- gCGCGGCGGCgcgggccgGCCggcGCUCCGCCG-CCGc -3'
miRNA:   3'- -GUGCCGUCG--------CGGa--CGAGGUGGCuGGU- -5'
21488 5' -61.6 NC_004812.1 + 25185 0.75 0.211817
Target:  5'- cCGgGGCGGCGUCgcggcgGCUCCGCCcGCCGg -3'
miRNA:   3'- -GUgCCGUCGCGGa-----CGAGGUGGcUGGU- -5'
21488 5' -61.6 NC_004812.1 + 155107 0.75 0.211817
Target:  5'- gCGCGGCGGCgcgggccgGCCggcGCUCCGCCG-CCGc -3'
miRNA:   3'- -GUGCCGUCG--------CGGa--CGAGGUGGCuGGU- -5'
21488 5' -61.6 NC_004812.1 + 136198 0.75 0.216922
Target:  5'- gACcGCAGCGCCUGCcgcacCCACCG-CCAg -3'
miRNA:   3'- gUGcCGUCGCGGACGa----GGUGGCuGGU- -5'
21488 5' -61.6 NC_004812.1 + 152882 0.75 0.222131
Target:  5'- gCGCGGCccGCGCCaggugcGCUCCGCCGGCg- -3'
miRNA:   3'- -GUGCCGu-CGCGGa-----CGAGGUGGCUGgu -5'
21488 5' -61.6 NC_004812.1 + 27374 0.75 0.222131
Target:  5'- gCGCGGCccGCGCCaggugcGCUCCGCCGGCg- -3'
miRNA:   3'- -GUGCCGu-CGCGGa-----CGAGGUGGCUGgu -5'
21488 5' -61.6 NC_004812.1 + 54607 0.75 0.222131
Target:  5'- uCGCGGCGGCGCC-GCgagUCGCgCGACCc -3'
miRNA:   3'- -GUGCCGUCGCGGaCGa--GGUG-GCUGGu -5'
21488 5' -61.6 NC_004812.1 + 27131 0.74 0.23287
Target:  5'- cUACGGCGGCGaCCUGg-CCGCCGugCc -3'
miRNA:   3'- -GUGCCGUCGC-GGACgaGGUGGCugGu -5'
21488 5' -61.6 NC_004812.1 + 152640 0.74 0.23287
Target:  5'- cUACGGCGGCGaCCUGg-CCGCCGugCc -3'
miRNA:   3'- -GUGCCGUCGC-GGACgaGGUGGCugGu -5'
21488 5' -61.6 NC_004812.1 + 77174 0.74 0.23287
Target:  5'- cCGCGGCGGCGCCguccCCGCCG-CCGg -3'
miRNA:   3'- -GUGCCGUCGCGGacgaGGUGGCuGGU- -5'
21488 5' -61.6 NC_004812.1 + 54795 0.74 0.238401
Target:  5'- aGCGGgGGCGCCgcgGUUCCugccguCCGACCu -3'
miRNA:   3'- gUGCCgUCGCGGa--CGAGGu-----GGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 79477 0.74 0.244042
Target:  5'- gAC-GCGGCGCCUggccgaggacgcGCUCCACCaGGCCAa -3'
miRNA:   3'- gUGcCGUCGCGGA------------CGAGGUGG-CUGGU- -5'
21488 5' -61.6 NC_004812.1 + 67212 0.74 0.248056
Target:  5'- gGCGGCGGCGCCcgcggGCUCCcuccucucgagggaGCCG-CCGg -3'
miRNA:   3'- gUGCCGUCGCGGa----CGAGG--------------UGGCuGGU- -5'
21488 5' -61.6 NC_004812.1 + 100643 0.74 0.255655
Target:  5'- gCACGGCGGCGCgaGC-CgCGCCgGGCCGg -3'
miRNA:   3'- -GUGCCGUCGCGgaCGaG-GUGG-CUGGU- -5'
21488 5' -61.6 NC_004812.1 + 27466 0.74 0.26163
Target:  5'- aCGCgGGCGGCGCCgcgcGC-CCGCCGGCg- -3'
miRNA:   3'- -GUG-CCGUCGCGGa---CGaGGUGGCUGgu -5'
21488 5' -61.6 NC_004812.1 + 152974 0.74 0.26163
Target:  5'- aCGCgGGCGGCGCCgcgcGC-CCGCCGGCg- -3'
miRNA:   3'- -GUG-CCGUCGCGGa---CGaGGUGGCUGgu -5'
21488 5' -61.6 NC_004812.1 + 148292 0.73 0.267105
Target:  5'- gGCGGCGGCGCCggcccgcUGCUgcgcUCGCUGGCCu -3'
miRNA:   3'- gUGCCGUCGCGG-------ACGA----GGUGGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 117391 0.73 0.267105
Target:  5'- gGCGGCGGCGCCggcccgcUGCUgcgcUCGCUGGCCu -3'
miRNA:   3'- gUGCCGUCGCGG-------ACGA----GGUGGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 150696 0.73 0.267719
Target:  5'- --gGGCGGCGUCgcggcgGCUCCGCCcGCCGg -3'
miRNA:   3'- gugCCGUCGCGGa-----CGAGGUGGcUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.