Results 21 - 40 of 396 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21499 | 5' | -54.8 | NC_004812.1 | + | 21803 | 0.76 | 0.434699 |
Target: 5'- -aGCGGCGGCAGaagcggGCGGCGAu-CUCGg -3' miRNA: 3'- gaCGCCGUCGUCg-----UGCUGCUuuGAGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 3584 | 0.76 | 0.45299 |
Target: 5'- -gGCGGCGGCGGCGggcgggcgcgcCGGCGAggAGCUCu -3' miRNA: 3'- gaCGCCGUCGUCGU-----------GCUGCU--UUGAGc -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 129092 | 0.76 | 0.45299 |
Target: 5'- -gGCGGCGGCGGCGggcgggcgcgcCGGCGAggAGCUCu -3' miRNA: 3'- gaCGCCGUCGUCGU-----------GCUGCU--UUGAGc -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 129272 | 0.76 | 0.471691 |
Target: 5'- -cGCGGCGGC-GCcgGCGACGAGGCUg- -3' miRNA: 3'- gaCGCCGUCGuCG--UGCUGCUUUGAgc -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 129748 | 0.76 | 0.471691 |
Target: 5'- -gGCGGCGGCGGCGgCGGCGgcGCcCGc -3' miRNA: 3'- gaCGCCGUCGUCGU-GCUGCuuUGaGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 4240 | 0.76 | 0.471691 |
Target: 5'- -gGCGGCGGCGGCGgCGGCGgcGCcCGc -3' miRNA: 3'- gaCGCCGUCGUCGU-GCUGCuuUGaGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 128737 | 0.76 | 0.471691 |
Target: 5'- -cGCGGCGGCcgaaGGCGCGGcCGGAgccggGCUCGg -3' miRNA: 3'- gaCGCCGUCG----UCGUGCU-GCUU-----UGAGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 3764 | 0.76 | 0.471691 |
Target: 5'- -cGCGGCGGC-GCcgGCGACGAGGCUg- -3' miRNA: 3'- gaCGCCGUCGuCG--UGCUGCUUUGAgc -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 75987 | 0.75 | 0.481187 |
Target: 5'- -gGCGGC-GCAGCuCGACGGcgucgAACUCGg -3' miRNA: 3'- gaCGCCGuCGUCGuGCUGCU-----UUGAGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 107577 | 0.75 | 0.490775 |
Target: 5'- -gGCGGCGGCGGCGCGGuuGAcCUCGu -3' miRNA: 3'- gaCGCCGUCGUCGUGCUgcUUuGAGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 55282 | 0.75 | 0.500451 |
Target: 5'- uCUGCGGCgAGCGccuGCACGcCGAGguggGCUCGg -3' miRNA: 3'- -GACGCCG-UCGU---CGUGCuGCUU----UGAGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 53053 | 0.75 | 0.500451 |
Target: 5'- -cGCGGCAGCuGCACcgccaGGCGgcGCUCa -3' miRNA: 3'- gaCGCCGUCGuCGUG-----CUGCuuUGAGc -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 108248 | 0.75 | 0.500451 |
Target: 5'- -gGCGGCGGCGucCGCGGCGGAGCccUCGg -3' miRNA: 3'- gaCGCCGUCGUc-GUGCUGCUUUG--AGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 128390 | 0.75 | 0.510211 |
Target: 5'- -gGCGGcCGGCGGCgGCGGCGAGcaggccgagguACUCGa -3' miRNA: 3'- gaCGCC-GUCGUCG-UGCUGCUU-----------UGAGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 2882 | 0.75 | 0.510211 |
Target: 5'- -gGCGGcCGGCGGCgGCGGCGAGcaggccgagguACUCGa -3' miRNA: 3'- gaCGCC-GUCGUCG-UGCUGCUU-----------UGAGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 85017 | 0.75 | 0.510211 |
Target: 5'- -aGCGGCuGUAcGCGCG-CGggGCUCGu -3' miRNA: 3'- gaCGCCGuCGU-CGUGCuGCuuUGAGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 91545 | 0.75 | 0.520048 |
Target: 5'- -gGCGGCGGCGGC-CGcCGAGACcgCGu -3' miRNA: 3'- gaCGCCGUCGUCGuGCuGCUUUGa-GC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 26105 | 0.74 | 0.546963 |
Target: 5'- gUGgGGCGGCAGCGCGuccgggaucGCGAccgccgaccacccgGGCUCGa -3' miRNA: 3'- gACgCCGUCGUCGUGC---------UGCU--------------UUGAGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 128286 | 0.74 | 0.549982 |
Target: 5'- -cGCGGCgGGCAGCACGGCGcaGGGCa-- -3' miRNA: 3'- gaCGCCG-UCGUCGUGCUGC--UUUGagc -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 36016 | 0.74 | 0.549982 |
Target: 5'- gCUGCGGUGGCGG-GCGGCG-AugUCGg -3' miRNA: 3'- -GACGCCGUCGUCgUGCUGCuUugAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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